Variant report

Variant	rs8037152
Chromosome Location	chr15:75156996-75156997
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75133661..75135523-chr15:75156193..75157818,2	MCF-7	breast:
2	chr15:75155291..75158241-chr15:75246616..75248751,2	K562	blood:
3	chr15:75146673..75148459-chr15:75156856..75158580,2	K562	blood:
4	chr15:75156545..75159476-chr15:75183223..75185437,3	MCF-7	breast:
5	chr15:75154429..75158026-chr15:75164223..75166299,3	MCF-7	breast:
6	chr15:75156504..75159434-chr15:75228735..75231326,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178741	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000140474	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12050585	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12385940	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28844983	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4886642	0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.82[EUR][1000 genomes]
rs6495128	0.83[AFR][1000 genomes]
rs68036747	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7182183	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72625793	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7495033	0.80[AFR][1000 genomes]
rs8025170	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8027865	0.83[LWK][hapmap];0.80[YRI][hapmap]
rs8029351	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8030528	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs872263	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs8037152	ULK3	cis	parietal	SCAN
rs8037152	CYP1A1	cis	cerebellum	SCAN
rs8037152	SPESP1	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75136200-75160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:75136200-75161800	Weak transcription	Fetal Kidney	kidney
3	chr15:75136400-75158000	Weak transcription	NHDF-Ad	bronchial
4	chr15:75136600-75163000	Weak transcription	Fetal Brain Male	brain
5	chr15:75137000-75164800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:75143600-75163000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:75145000-75160000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:75146000-75158200	Weak transcription	NHLF	lung
9	chr15:75146000-75164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:75146200-75163200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:75146400-75158400	Weak transcription	HUVEC	blood vessel
12	chr15:75146400-75160400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:75146400-75161800	Weak transcription	Fetal Lung	lung
14	chr15:75146400-75163200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:75146600-75159400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:75146600-75159400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:75146600-75160000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:75146600-75163000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:75146600-75164600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:75146800-75158600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:75146800-75159800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:75147000-75158400	Weak transcription	Liver	Liver
23	chr15:75147000-75159600	Weak transcription	Fetal Brain Female	brain
24	chr15:75147000-75160000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:75147000-75164800	Weak transcription	Ovary	ovary
26	chr15:75147200-75159400	Weak transcription	Thymus	Thymus
27	chr15:75147200-75164800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:75150000-75158400	Weak transcription	A549	lung
29	chr15:75150000-75158600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:75150000-75160000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr15:75150000-75160200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:75150200-75157800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr15:75150200-75160200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:75150400-75159600	Weak transcription	Dnd41	blood
35	chr15:75150400-75161800	Weak transcription	Aorta	Aorta
36	chr15:75150600-75159600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:75150600-75159600	Weak transcription	K562	blood
38	chr15:75150600-75160200	Weak transcription	Brain Germinal Matrix	brain
39	chr15:75151000-75160000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:75151200-75158000	Weak transcription	Small Intestine	intestine
41	chr15:75151200-75161800	Weak transcription	Brain Angular Gyrus	brain
42	chr15:75151800-75160200	Weak transcription	Brain Substantia Nigra	brain
43	chr15:75151800-75161800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:75152200-75158000	Weak transcription	Fetal Thymus	thymus
45	chr15:75152200-75162200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:75152400-75157000	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr15:75152400-75157800	Weak transcription	Adipose Nuclei	Adipose
48	chr15:75152400-75158000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:75152400-75158000	Weak transcription	Fetal Heart	heart
50	chr15:75152400-75158400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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