Variant report

Variant	rs8027865
Chromosome Location	chr15:75241978-75241979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75227405..75232101-chr15:75240880..75245269,7	K562	blood:
2	chr15:75062011..75065079-chr15:75241934..75244440,3	K562	blood:
3	chr15:75190211..75193395-chr15:75240493..75244229,3	K562	blood:
4	chr15:75133829..75136653-chr15:75240759..75243011,2	MCF-7	breast:
5	chr15:75241283..75245937-chr15:75246466..75251026,6	MCF-7	breast:
6	chr15:75227744..75230644-chr15:75241148..75245834,4	MCF-7	breast:
7	chr15:75230684..75233545-chr15:75240666..75243192,3	MCF-7	breast:
8	chr15:75241707..75244594-chr15:75247283..75249882,3	MCF-7	breast:
9	chr15:75052007..75054133-chr15:75241107..75244703,3	K562	blood:
10	chr15:75240908..75244606-chr15:75245585..75249293,3	K562	blood:
11	chr15:75237193..75238975-chr15:75241477..75242984,2	MCF-7	breast:
12	chr15:75196119..75200207-chr15:75241156..75244541,4	MCF-7	breast:
13	chr15:75197433..75199009-chr15:75241405..75242986,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000260824	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000178741	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000198794	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs35465927	1.00[AMR][1000 genomes]
rs4617828	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56920469	1.00[AMR][1000 genomes]
rs57015557	1.00[AMR][1000 genomes]
rs7181451	1.00[AMR][1000 genomes]
rs73436511	1.00[AMR][1000 genomes]
rs73436523	1.00[AMR][1000 genomes]
rs8025170	0.83[LWK][hapmap];0.80[YRI][hapmap]
rs8025654	1.00[AMR][1000 genomes]
rs8028315	1.00[AMR][1000 genomes]
rs8029351	0.83[LWK][hapmap];0.80[YRI][hapmap]
rs8037152	0.83[LWK][hapmap];0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75231000-75243200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:75237000-75244400	Weak transcription	Placenta	Placenta
3	chr15:75240800-75242000	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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