Variant report

Variant	rs57015557
Chromosome Location	chr15:75212435-75212436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75211836..75213812-chr15:75215645..75218117,2	K562	blood:
2	chr15:75167340..75169926-chr15:75209940..75212819,2	K562	blood:
3	chr15:75210105..75212833-chr15:75214992..75217105,2	K562	blood:
4	chr15:75210426..75213159-chr15:75229718..75232065,4	K562	blood:
5	chr15:75210535..75212443-chr15:75223416..75224933,2	MCF-7	breast:
6	chr15:75212247..75213940-chr15:75221942..75223601,2	K562	blood:
7	chr15:75182374..75183983-chr15:75212362..75214370,2	MCF-7	breast:
8	chr15:75210612..75213940-chr15:75219994..75223601,6	K562	blood:
9	chr15:75193756..75196013-chr15:75211451..75215315,3	K562	blood:
10	chr15:75190074..75192839-chr15:75211029..75213890,2	K562	blood:
11	chr15:75182811..75184655-chr15:75210487..75213459,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000178741	Chromatin interaction
ENSG00000260824	Chromatin interaction
ENSG00000178802	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs35465927	1.00[AMR][1000 genomes]
rs4617828	1.00[AMR][1000 genomes]
rs56920469	1.00[AMR][1000 genomes]
rs7181451	1.00[AMR][1000 genomes]
rs73436511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73436523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025654	1.00[AMR][1000 genomes]
rs8027865	1.00[AMR][1000 genomes]
rs8028315	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75199600-75229400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:75199800-75219600	Weak transcription	Aorta	Aorta
3	chr15:75200000-75221000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:75200000-75224000	Weak transcription	Stomach Mucosa	stomach
5	chr15:75200400-75221200	Weak transcription	Fetal Heart	heart
6	chr15:75201000-75213000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:75201000-75224600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:75202000-75224400	Strong transcription	Fetal Muscle Trunk	muscle
9	chr15:75202200-75224400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:75202600-75224800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:75202600-75225000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr15:75203000-75212600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:75203000-75224400	Strong transcription	Fetal Muscle Leg	muscle
14	chr15:75203000-75224600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:75203200-75212800	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr15:75203200-75222200	Strong transcription	Left Ventricle	heart
17	chr15:75203400-75218000	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:75203800-75223000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:75203800-75224200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr15:75203800-75224400	Strong transcription	Fetal Intestine Large	intestine
21	chr15:75203800-75224600	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:75204000-75212600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:75204000-75216600	Strong transcription	Thymus	Thymus
24	chr15:75204000-75217600	Strong transcription	Lung	lung
25	chr15:75204000-75220600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr15:75204000-75221800	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:75204000-75222200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:75204000-75222400	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:75204000-75224200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:75204000-75224200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:75204000-75224400	Strong transcription	Placenta	Placenta
32	chr15:75204000-75224600	Strong transcription	Liver	Liver
33	chr15:75204000-75224600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:75204000-75224800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:75204000-75224800	Strong transcription	Fetal Thymus	thymus
36	chr15:75204000-75228400	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:75204200-75224200	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr15:75204400-75224600	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr15:75204600-75229200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr15:75205400-75213000	Strong transcription	Rectal Smooth Muscle	rectum
41	chr15:75205400-75216600	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr15:75205600-75213200	Strong transcription	Brain Anterior Caudate	brain
43	chr15:75205600-75222000	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr15:75205600-75223200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:75206000-75216200	Strong transcription	A549	lung
46	chr15:75206200-75222200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:75206200-75224400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:75206400-75217800	Strong transcription	Primary B cells from peripheral blood	blood
49	chr15:75206400-75224200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:75206600-75221800	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links