Variant report

Variant	rs73436511
Chromosome Location	chr15:75180101-75180102
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:75179870-75180175	K562	blood:	n/a	n/a
2	NR2F2	chr15:75180095-75180629	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:75131329..75142649-chr15:75180088..75200119,60	MCF-7	breast:
2	chr15:75180021..75183481-chr15:75226759..75230284,3	K562	blood:
3	chr15:75178767..75180347-chr15:75180887..75182737,2	MCF-7	breast:

Variant related genes	Relation type
MPI	TF binding region
ENSG00000178802	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000178741	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs35465927	1.00[AMR][1000 genomes]
rs4617828	1.00[AMR][1000 genomes]
rs56920469	1.00[AMR][1000 genomes]
rs57015557	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181451	1.00[AMR][1000 genomes]
rs73436523	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8025654	1.00[AMR][1000 genomes]
rs8027865	1.00[AMR][1000 genomes]
rs8028315	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv990390	chr15:75179300-75187945	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75166200-75181000	Weak transcription	Fetal Heart	heart
2	chr15:75175200-75181000	Weak transcription	Spleen	Spleen
3	chr15:75175400-75181200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:75176800-75181200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr15:75176800-75181400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:75176800-75181800	Weak transcription	A549	lung
7	chr15:75177000-75181200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr15:75177000-75181800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:75177200-75181000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:75177200-75181400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr15:75177200-75181600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:75177200-75181800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:75177400-75181000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:75177400-75181200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:75177400-75181200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:75177400-75181200	Weak transcription	NH-A	brain
17	chr15:75177400-75181400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:75177400-75181400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:75177400-75181600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr15:75177600-75181000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:75177600-75181000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:75177600-75181000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:75177600-75181000	Weak transcription	HepG2	liver
24	chr15:75177600-75181200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:75177600-75181200	Weak transcription	GM12878-XiMat	blood
26	chr15:75177600-75181400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:75177600-75181400	Weak transcription	HSMMtube	muscle
28	chr15:75177600-75181400	Weak transcription	NHLF	lung
29	chr15:75177600-75181400	Weak transcription	Osteobl	bone
30	chr15:75177800-75181000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr15:75177800-75181000	Weak transcription	Placenta	Placenta
32	chr15:75177800-75181400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:75177800-75181400	Weak transcription	Hela-S3	cervix
34	chr15:75177800-75181600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:75178000-75181000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:75178000-75181000	Weak transcription	Adipose Nuclei	Adipose
37	chr15:75178000-75181200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:75178000-75181200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:75178000-75181200	Weak transcription	NHEK	skin
40	chr15:75178000-75181400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:75178000-75181400	Weak transcription	HMEC	breast
42	chr15:75178000-75181400	Weak transcription	HSMM	muscle
43	chr15:75178200-75181200	Weak transcription	NHDF-Ad	bronchial
44	chr15:75178600-75181000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:75178800-75181200	Weak transcription	Fetal Intestine Small	intestine
46	chr15:75179000-75181000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr15:75179000-75181400	Weak transcription	Fetal Intestine Large	intestine
48	chr15:75179200-75181000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr15:75179200-75181000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr15:75179600-75180200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links