Variant report

Variant	rs8025654
Chromosome Location	chr15:75125473-75125474
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75073599..75076124-chr15:75124394..75126298,4	MCF-7	breast:
2	chr15:75083074..75085645-chr15:75125080..75128060,2	K562	blood:
3	chr15:75123632..75126231-chr15:75130110..75134336,4	K562	blood:
4	chr15:75125237..75126923-chr15:75181778..75183918,2	K562	blood:
5	chr15:75116704..75120003-chr15:75124484..75128455,4	K562	blood:
6	chr15:75066889..75068448-chr15:75124429..75127236,2	MCF-7	breast:
7	chr15:75063099..75065381-chr15:75123543..75126065,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178802	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000213578	Chromatin interaction
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs35465927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35979634	1.00[AFR][1000 genomes]
rs4617828	1.00[AMR][1000 genomes]
rs56920469	1.00[AMR][1000 genomes]
rs57015557	1.00[AMR][1000 genomes]
rs7181451	1.00[AMR][1000 genomes]
rs73436511	1.00[AMR][1000 genomes]
rs73436523	1.00[AMR][1000 genomes]
rs8027865	1.00[AMR][1000 genomes]
rs8028315	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75111400-75128000	Weak transcription	Gastric	stomach
2	chr15:75119200-75125600	Weak transcription	Spleen	Spleen
3	chr15:75119600-75127800	Weak transcription	Pancreas	Pancrea
4	chr15:75121400-75132000	Weak transcription	A549	lung
5	chr15:75121400-75134600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:75121800-75134600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:75122400-75126600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr15:75122400-75126600	Enhancers	Fetal Muscle Leg	muscle
9	chr15:75122600-75126200	Enhancers	Fetal Brain Male	brain
10	chr15:75122600-75131200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:75122800-75126200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr15:75122800-75127800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:75122800-75128000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:75122800-75128000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:75122800-75128000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:75122800-75128000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr15:75122800-75128800	Weak transcription	Fetal Thymus	thymus
18	chr15:75123200-75126200	Enhancers	Duodenum Mucosa	Duodenum
19	chr15:75123200-75128000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:75123200-75128200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr15:75123200-75129200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:75123200-75130600	Weak transcription	Osteobl	bone
23	chr15:75123400-75126200	Enhancers	Fetal Intestine Small	intestine
24	chr15:75123400-75128000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:75123600-75125600	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr15:75123600-75126400	Enhancers	Fetal Intestine Large	intestine
27	chr15:75123600-75129000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:75123600-75129000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:75123800-75125800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:75123800-75126000	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr15:75123800-75128000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr15:75123800-75129000	Weak transcription	Brain Substantia Nigra	brain
33	chr15:75123800-75129200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:75123800-75134200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:75123800-75134200	Weak transcription	Primary B cells from cord blood	blood
36	chr15:75123800-75134400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:75123800-75134400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:75123800-75134400	Weak transcription	HSMM	muscle
39	chr15:75124000-75126600	Enhancers	HepG2	liver
40	chr15:75124000-75127600	Weak transcription	Brain Germinal Matrix	brain
41	chr15:75124000-75127600	Weak transcription	Fetal Brain Female	brain
42	chr15:75124000-75128000	Weak transcription	Brain Angular Gyrus	brain
43	chr15:75124000-75128000	Weak transcription	Brain Cingulate Gyrus	brain
44	chr15:75124000-75128000	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:75124000-75128200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr15:75124000-75134400	Weak transcription	HSMMtube	muscle
47	chr15:75124200-75127800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:75124200-75128800	Weak transcription	Colon Smooth Muscle	Colon
49	chr15:75124200-75132200	Weak transcription	K562	blood
50	chr15:75124400-75126200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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