Variant report

Variant	rs6495233
Chromosome Location	chr15:77383651-77383652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77376000..77380295-chr15:77383210..77388608,6	MCF-7	breast:
2	chr15:77377099..77380194-chr15:77383029..77386419,3	K562	blood:

Variant related genes	Relation type
ENSG00000140391	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11630837	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11637488	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11638220	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11639079	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11639197	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12909704	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12910419	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17382798	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17466989	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2864082	0.80[AMR][1000 genomes]
rs34870981	0.82[AMR][1000 genomes]
rs35598964	0.81[AMR][1000 genomes]
rs4450362	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56060493	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71405237	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7166293	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7176254	0.80[AMR][1000 genomes]
rs7181345	0.80[AMR][1000 genomes]
rs7182880	0.82[AMR][1000 genomes]
rs8030500	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8032925	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6495233	RP11-797A18.4	cis	Whole Blood	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77376800-77395600	Weak transcription	Fetal Intestine Small	intestine
2	chr15:77378600-77392000	Weak transcription	Primary B cells from cord blood	blood
3	chr15:77380000-77389200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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