Variant report

Variant	rs8032925
Chromosome Location	chr15:77481902-77481903
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77481285..77483374-chr15:77795738..77797524,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11630837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11630843	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11631909	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11632999	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11633318	0.82[AMR][1000 genomes]
rs11634056	0.91[ASN][1000 genomes]
rs11636803	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11637488	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11638220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11639079	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11639197	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12904384	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12909704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17382798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17383727	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17383984	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17384406	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17466989	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468792	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2100054	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2864082	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33940778	0.85[JPT][hapmap]
rs34672572	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34870981	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35598964	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4450362	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56060493	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62008430	0.85[ASN][1000 genomes]
rs62008432	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62008434	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62008455	0.81[AMR][1000 genomes]
rs6495233	0.80[AMR][1000 genomes]
rs66715204	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71405237	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166293	1.00[CEU][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7176254	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7181345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7182880	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8030500	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8032925	RP11-797A18.4	cis	Adipose Subcutaneous	GTEx
rs8032925	RP11-797A18.4	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77451200-77491800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:77461600-77496800	Weak transcription	Lung	lung
3	chr15:77465400-77488200	Weak transcription	Psoas Muscle	Psoas
4	chr15:77467200-77491400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:77469400-77483800	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:77469800-77491200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:77469800-77499200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:77471000-77482600	Weak transcription	Fetal Brain Male	brain
9	chr15:77471400-77505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:77471800-77482000	Weak transcription	Colonic Mucosa	Colon
11	chr15:77471800-77491400	Weak transcription	Aorta	Aorta
12	chr15:77472400-77500800	Weak transcription	HSMMtube	muscle
13	chr15:77473000-77483600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:77473600-77527800	Weak transcription	Placenta	Placenta
15	chr15:77474200-77482400	Enhancers	Primary B cells from peripheral blood	blood
16	chr15:77474200-77490600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:77474800-77482600	Enhancers	Primary B cells from cord blood	blood
18	chr15:77476400-77491400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:77477200-77482200	Enhancers	Primary hematopoietic stem cells	blood
20	chr15:77477200-77482800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr15:77477200-77485800	Enhancers	Fetal Heart	heart
22	chr15:77477600-77482400	Enhancers	Adipose Nuclei	Adipose
23	chr15:77477800-77482400	Enhancers	NHDF-Ad	bronchial
24	chr15:77478800-77482200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr15:77479000-77482400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr15:77479200-77482200	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr15:77479400-77486400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr15:77479400-77494400	Weak transcription	HepG2	liver
29	chr15:77479600-77490800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:77480400-77482600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr15:77480400-77482600	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr15:77480400-77485200	Weak transcription	Fetal Intestine Small	intestine
33	chr15:77480400-77487600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:77480400-77488000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:77480400-77488000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr15:77480400-77488200	Weak transcription	Fetal Intestine Large	intestine
37	chr15:77480400-77492000	Weak transcription	Small Intestine	intestine
38	chr15:77480400-77492000	Weak transcription	Thymus	Thymus
39	chr15:77480400-77528000	Weak transcription	Fetal Stomach	stomach
40	chr15:77480600-77485600	Weak transcription	NHEK	skin
41	chr15:77480600-77487600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:77480600-77488000	Weak transcription	Brain Substantia Nigra	brain
43	chr15:77480600-77488000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr15:77480600-77490600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr15:77480600-77490600	Weak transcription	HSMM	muscle
46	chr15:77480800-77482000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr15:77480800-77482000	Enhancers	HUVEC	blood vessel
48	chr15:77480800-77482200	Enhancers	Dnd41	blood
49	chr15:77480800-77482800	Enhancers	GM12878-XiMat	blood
50	chr15:77480800-77491200	Weak transcription	NH-A	brain

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