Variant report

Variant	rs11633318
Chromosome Location	chr15:77602698-77602699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77597221..77600603-chr15:77601241..77604606,4	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10519167	0.92[JPT][hapmap];0.86[TSI][hapmap]
rs11630837	0.89[CEU][hapmap];0.92[JPT][hapmap]
rs11630843	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11631909	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11632729	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11632999	0.92[JPT][hapmap]
rs11636803	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11637488	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs11638220	0.89[CEU][hapmap];0.92[JPT][hapmap]
rs11639079	0.85[CEU][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap]
rs11639197	0.85[CEU][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap];0.93[TSI][hapmap]
rs12904384	0.92[JPT][hapmap]
rs12909704	0.89[CEU][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.95[TSI][hapmap]
rs12910419	0.89[CEU][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.95[TSI][hapmap]
rs16968835	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17382798	0.89[CEU][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs17383727	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17383984	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17384406	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17466989	0.88[CEU][hapmap];0.84[GIH][hapmap];0.91[JPT][hapmap];0.95[TSI][hapmap]
rs17468792	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2100054	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2864082	0.82[EUR][1000 genomes]
rs34672572	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34870981	0.81[EUR][1000 genomes]
rs35598964	0.84[AMR][1000 genomes]
rs56060493	0.90[ASN][1000 genomes]
rs62008432	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62008434	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62008455	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66715204	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7119	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7166293	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs7181345	0.82[AMR][1000 genomes]
rs7182880	0.81[EUR][1000 genomes]
rs8032071	0.81[GIH][hapmap];0.92[JPT][hapmap];0.86[TSI][hapmap]
rs8032925	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1051744	chr15:77511489-77679160	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1044270	chr15:77534919-77611256	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv542445	chr15:77534919-77611256	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1040430	chr15:77584375-77676957	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77577200-77619400	Weak transcription	HSMM	muscle
2	chr15:77583000-77603600	Weak transcription	Left Ventricle	heart
3	chr15:77588600-77603400	Weak transcription	Osteobl	bone
4	chr15:77592800-77604000	Weak transcription	NHDF-Ad	bronchial
5	chr15:77597400-77604800	Weak transcription	Psoas Muscle	Psoas
6	chr15:77598800-77609800	Weak transcription	Brain Angular Gyrus	brain
7	chr15:77599000-77603000	Weak transcription	Adipose Nuclei	Adipose
8	chr15:77599000-77603000	Weak transcription	A549	lung
9	chr15:77599600-77604800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:77599800-77603600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:77600200-77605000	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:77600400-77605000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:77601000-77603000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:77601200-77603000	Enhancers	GM12878-XiMat	blood
15	chr15:77601600-77602800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:77601800-77603800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:77602000-77603000	Weak transcription	Stomach Mucosa	stomach
18	chr15:77602000-77604000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:77602200-77603200	Enhancers	Primary T cells from cord blood	blood
20	chr15:77602400-77605400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:77602600-77603200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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