Variant report

Variant	rs6496836
Chromosome Location	chr15:92133741-92133742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6496835	0.96[EUR][1000 genomes]
rs6496839	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6496840	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6496842	0.95[ASN][1000 genomes]
rs72757881	0.84[ASN][1000 genomes]
rs7402384	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7495709	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833095	chr15:92006793-92151176	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92133000-92134200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr15:92133400-92134000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:92133400-92134000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr15:92133600-92134000	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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