Variant report

Variant	rs6499518
Chromosome Location	chr16:71442147-71442148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1030483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102284	0.87[AFR][1000 genomes]
rs12925320	0.89[CHB][hapmap]
rs16972292	0.84[YRI][hapmap]
rs2018719	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4788801	0.83[ASN][1000 genomes]
rs6499507	0.84[CHB][hapmap]
rs67771172	0.90[ASN][1000 genomes]
rs7203957	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7500119	0.88[ASN][1000 genomes]
rs891124	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1064435	chr16:71440719-71488771	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71434800-71446600	Weak transcription	Right Atrium	heart
2	chr16:71436600-71446000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:71439200-71445800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr16:71440200-71442400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr16:71440800-71442200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr16:71441000-71442600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr16:71441200-71442400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr16:71441400-71442200	Enhancers	Primary hematopoietic stem cells	blood
9	chr16:71441600-71442600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr16:71441800-71446400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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