Variant report
| Variant | rs6500407 |
|---|---|
| Chromosome Location | chr16:48750797-48750798 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:12)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:12 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr16:48750796-48750850 | MCF-7 | breast: | n/a | n/a |
| 2 | CEBPB | chr16:48750539-48750811 | A549 | lung: | n/a | chr16:48750640-48750651 |
| 3 | CTCF | chr16:48750740-48750890 | Hela-S3 | cervix: | n/a | n/a |
| 4 | RAD21 | chr16:48750751-48750982 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | CTCF | chr16:48750760-48750910 | WERI-Rb-1 | eye: | n/a | n/a |
| 6 | CTCF | chr16:48750740-48750890 | NB4 | blood: | n/a | n/a |
| 7 | CTCF | chr16:48750740-48750890 | GM12873 | blood: | n/a | n/a |
| 8 | CTCF | chr16:48750780-48750930 | SK-N-SH_RA | brain: | n/a | n/a |
| 9 | CTCF | chr16:48750720-48750870 | HepG2 | liver: | n/a | n/a |
| 10 | CTCF | chr16:48750740-48750890 | HEK293 | kidney: | n/a | n/a |
| 11 | CTCF | chr16:48750780-48750930 | WERI-Rb-1 | eye: | n/a | n/a |
| 12 | CTCF | chr16:48750760-48750910 | GM12864 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| KLF8P1 | TF binding region |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs1345436 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs1345440 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap] |
| rs1420722 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap] |
| rs4785251 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap] |
| rs7403984 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833220 | chr16:48747177-48899984 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
