Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr16:48768133-48768785	MCF-7	breast:	n/a	n/a
2	GATA3	chr16:48768041-48768905	MCF-7	breast:	n/a	n/a
3	GATA3	chr16:48768192-48768790	T-47D	breast:	n/a	n/a
4	FOXA1	chr16:48768442-48768751	T-47D	breast:	n/a	n/a
5	GATA3	chr16:48768221-48768763	T-47D	breast:	n/a	n/a
6	NR2F2	chr16:48768324-48768812	MCF-7	breast:	n/a	n/a
7	HDAC2	chr16:48768176-48768832	MCF-7	breast:	n/a	n/a
8	ZNF217	chr16:48768130-48768868	MCF-7	breast:	n/a	n/a
9	CEBPB	chr16:48768227-48768784	MCF-7	breast:	n/a	n/a
10	FOSL2	chr16:48768194-48768828	MCF-7	breast:	n/a	chr16:48768346-48768358 chr16:48768347-48768357
11	JUND	chr16:48768209-48768881	MCF-7	breast:	n/a	chr16:48768346-48768358 chr16:48768347-48768357
12	SIN3AK20	chr16:48767943-48768990	MCF-7	breast:	n/a	n/a
13	RAD21	chr16:48768046-48768837	MCF-7	breast:	n/a	n/a
14	GATA3	chr16:48767943-48768995	MCF-7	breast:	n/a	n/a
15	RAD21	chr16:48768167-48768711	MCF-7	breast:	n/a	n/a
16	EP300	chr16:48768152-48768897	MCF-7	breast:	n/a	chr16:48768718-48768731
17	HDAC2	chr16:48768214-48768785	MCF-7	breast:	n/a	n/a
18	TCF7L2	chr16:48768010-48768690	MCF-7	breast:	n/a	chr16:48768132-48768139 chr16:48768129-48768143
19	FOXA1	chr16:48768492-48768752	T-47D	breast:	n/a	n/a
20	SIN3AK20	chr16:48768164-48768834	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
RNU6-257P	TF binding region

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1345436	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6500407	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833220	chr16:48747177-48899984	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48767800-48769000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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