Variant report

Variant	rs6501781
Chromosome Location	chr17:66832359-66832360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1008821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1008822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443257	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1443263	0.92[AFR][1000 genomes]
rs2218351	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4148006	0.85[CHB][hapmap]
rs4968963	0.91[EUR][1000 genomes]
rs4968964	0.92[EUR][1000 genomes]
rs6501851	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs8068987	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9896422	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9908305	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66828200-66833800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr17:66829200-66836200	Weak transcription	Fetal Muscle Leg	muscle
3	chr17:66829600-66832400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr17:66830200-66839600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr17:66831000-66832800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr17:66831400-66832400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:66831400-66832800	Enhancers	Adipose Nuclei	Adipose
8	chr17:66831400-66839200	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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