Variant report

Variant	rs6501920
Chromosome Location	chr17:66967598-66967599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10852773	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10852774	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10852776	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11077852	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1121077	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1122265	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11868372	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11869992	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12936488	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12938677	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12940203	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12940209	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12944603	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12945526	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1344055	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2041321	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2159433	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2364310	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3744499	0.84[CEU][hapmap]
rs4147944	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4147945	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4147946	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4147947	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4147948	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4147949	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4147950	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4147951	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs4147953	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs4147957	0.88[CEU][hapmap];0.80[CHB][hapmap]
rs4147968	0.83[CEU][hapmap]
rs4147970	0.84[CEU][hapmap]
rs4147973	0.83[CHB][hapmap]
rs4968980	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58680324	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6501916	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6501919	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7207730	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7210891	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7217589	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7221169	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7225239	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7225771	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs764425	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs764426	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8065455	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9897075	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9905330	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9916792	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1061151	chr17:66881617-66973917	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv908700	chr17:66885526-66985992	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv908701	chr17:66888346-66978319	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1849165	chr17:66899261-66978319	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv908703	chr17:66904001-66978319	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66960800-66969200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr17:66965600-66969200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr17:66965600-66969400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr17:66965600-66973200	Weak transcription	Brain Substantia Nigra	brain
5	chr17:66965600-66977600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr17:66965600-66980200	Weak transcription	Brain Anterior Caudate	brain
7	chr17:66965600-66986000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr17:66965800-66969200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr17:66966200-66977200	Weak transcription	Fetal Muscle Leg	muscle
10	chr17:66966400-66967600	Weak transcription	Brain Hippocampus Middle	brain
11	chr17:66966800-66972000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr17:66967400-66967800	Enhancers	Ovary	ovary

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