Variant report

Variant	rs9905330
Chromosome Location	chr17:66963301-66963302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10852773	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10852774	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10852776	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11077852	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1121077	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1122265	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11868372	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11869992	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12936488	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12938677	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12940203	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12940209	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12944603	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12945526	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1344055	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2041321	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2159433	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2364310	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3744498	0.80[CEU][hapmap]
rs3744499	0.84[CEU][hapmap]
rs4147944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4147945	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4147946	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4147947	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4147948	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4147949	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4147950	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4147951	0.88[CEU][hapmap];0.90[CHB][hapmap]
rs4147953	0.88[CEU][hapmap];0.90[CHB][hapmap]
rs4147957	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs4147968	0.84[CEU][hapmap]
rs4147970	0.84[CEU][hapmap]
rs4147973	0.89[CHB][hapmap]
rs4968980	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58680324	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6501916	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6501919	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6501920	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7207730	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7210891	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7217589	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7221169	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7225239	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7225771	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs764425	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs764426	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8065455	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9897075	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9916792	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1061151	chr17:66881617-66973917	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv908700	chr17:66885526-66985992	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv908701	chr17:66888346-66978319	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv1846502	chr17:66899261-66966274	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv1849165	chr17:66899261-66978319	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv908703	chr17:66904001-66978319	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66958600-66965000	Weak transcription	Fetal Brain Male	brain
2	chr17:66960800-66969200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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