Variant report

Variant	rs6503537
Chromosome Location	chr17:38357664-38357665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12103921	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12944717	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2280400	0.82[ASN][1000 genomes]
rs34223321	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3744806	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs45567834	0.82[ASN][1000 genomes]
rs55772196	0.82[ASN][1000 genomes]
rs55991953	0.82[ASN][1000 genomes]
rs56013073	0.84[ASN][1000 genomes]
rs61024420	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67597966	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs72836633	0.82[ASN][1000 genomes]
rs7405635	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8073925	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8082192	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9892973	0.84[ASN][1000 genomes]
rs9907683	0.82[ASN][1000 genomes]
rs9908354	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv525796	chr17:38306365-38405037	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38348400-38358200	Weak transcription	Adipose Nuclei	Adipose
2	chr17:38348400-38358400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr17:38348600-38358200	Weak transcription	HUVEC	blood vessel
4	chr17:38348600-38358200	Weak transcription	Osteobl	bone
5	chr17:38350200-38359400	Weak transcription	Colonic Mucosa	Colon
6	chr17:38350400-38358000	Weak transcription	Liver	Liver
7	chr17:38350400-38358200	Weak transcription	Brain Hippocampus Middle	brain
8	chr17:38350400-38358200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr17:38350400-38358600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr17:38350800-38359400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr17:38350800-38359400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr17:38354800-38358200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr17:38356000-38358000	Weak transcription	HepG2	liver
14	chr17:38357400-38358000	Enhancers	Placenta	Placenta
15	chr17:38357600-38358000	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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