Variant report

Variant	rs67597966
Chromosome Location	chr17:38365160-38365161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38365008..38367373-chr17:38374566..38377396,2	MCF-7	breast:
2	chr17:38362320..38365878-chr17:38367038..38370165,3	K562	blood:
3	chr17:38364372..38365941-chr17:38375222..38376743,2	K562	blood:
4	chr17:38356192..38359891-chr17:38364494..38367617,3	K562	blood:

Variant related genes	Relation type
ENSG00000171475	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11078939	0.84[ASN][1000 genomes]
rs11078940	0.84[ASN][1000 genomes]
rs12103921	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12944717	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16965687	0.88[ASN][1000 genomes]
rs2280400	0.94[ASN][1000 genomes]
rs28537537	0.88[ASN][1000 genomes]
rs28663197	0.87[ASN][1000 genomes]
rs34223321	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3744806	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4077125	0.82[ASN][1000 genomes]
rs45567834	0.94[ASN][1000 genomes]
rs4566234	0.85[ASN][1000 genomes]
rs55772196	0.93[ASN][1000 genomes]
rs55835834	0.94[ASN][1000 genomes]
rs55991953	0.95[ASN][1000 genomes]
rs56013073	0.94[ASN][1000 genomes]
rs56029626	0.98[ASN][1000 genomes]
rs58822685	0.82[ASN][1000 genomes]
rs59018914	0.94[ASN][1000 genomes]
rs59490243	0.82[ASN][1000 genomes]
rs59861136	0.98[ASN][1000 genomes]
rs60220138	0.82[ASN][1000 genomes]
rs61024420	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6503537	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6503539	0.88[ASN][1000 genomes]
rs72836633	0.95[ASN][1000 genomes]
rs72836634	1.00[ASN][1000 genomes]
rs72836635	1.00[ASN][1000 genomes]
rs72836636	0.98[ASN][1000 genomes]
rs72836639	0.96[ASN][1000 genomes]
rs72836640	0.95[ASN][1000 genomes]
rs72836641	0.95[ASN][1000 genomes]
rs72836642	0.90[ASN][1000 genomes]
rs72836648	0.88[ASN][1000 genomes]
rs72836651	0.82[ASN][1000 genomes]
rs72836653	0.82[ASN][1000 genomes]
rs72836656	0.82[ASN][1000 genomes]
rs72836660	0.82[ASN][1000 genomes]
rs7359537	0.88[ASN][1000 genomes]
rs73983025	0.82[ASN][1000 genomes]
rs7405635	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8073925	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8078204	0.86[ASN][1000 genomes]
rs8078226	0.82[ASN][1000 genomes]
rs8080931	0.85[ASN][1000 genomes]
rs8082192	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9891694	0.82[ASN][1000 genomes]
rs9891718	0.87[ASN][1000 genomes]
rs9892404	0.88[ASN][1000 genomes]
rs9892946	0.82[ASN][1000 genomes]
rs9892973	0.94[ASN][1000 genomes]
rs9893520	0.87[ASN][1000 genomes]
rs9895163	0.87[ASN][1000 genomes]
rs9897092	0.87[ASN][1000 genomes]
rs9904021	0.84[ASN][1000 genomes]
rs9906409	0.88[ASN][1000 genomes]
rs9907683	0.95[ASN][1000 genomes]
rs9908034	0.87[ASN][1000 genomes]
rs9908257	0.82[ASN][1000 genomes]
rs9908354	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9910197	0.82[ASN][1000 genomes]
rs9911840	0.87[ASN][1000 genomes]
rs9912082	0.87[ASN][1000 genomes]
rs9914531	0.83[ASN][1000 genomes]
rs9916460	0.82[ASN][1000 genomes]
rs9916782	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv525796	chr17:38306365-38405037	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38359600-38365400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr17:38359600-38365600	Weak transcription	NHDF-Ad	bronchial
3	chr17:38361000-38365400	Weak transcription	Osteobl	bone
4	chr17:38364400-38365400	Weak transcription	HepG2	liver
5	chr17:38364400-38366800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr17:38365000-38366800	Enhancers	HSMMtube	muscle

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