Variant report

Variant	rs72836639
Chromosome Location	chr17:38372697-38372698
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11078939	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11078940	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12103921	0.89[ASN][1000 genomes]
rs12944717	0.95[ASN][1000 genomes]
rs13706	0.89[EUR][1000 genomes]
rs16965687	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1807273	0.89[EUR][1000 genomes]
rs2280400	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28537537	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28663197	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34223321	0.90[ASN][1000 genomes]
rs3744806	0.90[ASN][1000 genomes]
rs4077125	0.83[ASN][1000 genomes]
rs45567834	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4566234	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55656553	0.80[EUR][1000 genomes]
rs55767073	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55772196	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55835834	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55991953	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56013073	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56029626	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58822685	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59018914	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59490243	0.83[ASN][1000 genomes]
rs59861136	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60220138	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61024420	0.94[ASN][1000 genomes]
rs6503539	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67597966	0.96[ASN][1000 genomes]
rs72836633	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72836634	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72836635	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72836636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72836640	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72836641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72836642	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72836648	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72836651	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72836653	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72836656	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72836660	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7359537	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73983025	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7405635	0.87[ASN][1000 genomes]
rs8073925	0.92[ASN][1000 genomes]
rs8078204	0.88[ASN][1000 genomes]
rs8078226	0.83[ASN][1000 genomes]
rs8080931	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8082192	0.90[ASN][1000 genomes]
rs9891694	0.83[ASN][1000 genomes]
rs9891718	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9892404	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9892946	0.83[ASN][1000 genomes]
rs9892973	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9893520	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9894625	0.87[EUR][1000 genomes]
rs9895163	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9897092	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9901109	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9904021	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9904270	0.80[EUR][1000 genomes]
rs9906409	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9907683	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9908034	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9908257	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9908354	0.91[ASN][1000 genomes]
rs9910197	0.83[ASN][1000 genomes]
rs9911840	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9912082	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9914531	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9916460	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9916782	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv525796	chr17:38306365-38405037	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38366800-38375000	Weak transcription	HSMM	muscle
2	chr17:38367400-38374600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr17:38369600-38374200	Weak transcription	HepG2	liver
4	chr17:38369600-38374800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:38372600-38374000	Weak transcription	Placenta	Placenta

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