Variant report

Variant	rs1807273
Chromosome Location	chr17:38439307-38439308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38434756..38436657-chr17:38438342..38440320,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11078939	0.84[AMR][1000 genomes]
rs11078940	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12051734	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12103711	0.92[ASN][1000 genomes]
rs12946680	0.91[ASN][1000 genomes]
rs13706	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16965687	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2077464	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2120200	0.92[ASN][1000 genomes]
rs28537537	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28663197	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36030243	0.92[ASN][1000 genomes]
rs4077125	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4134994	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4566234	0.84[AMR][1000 genomes]
rs55656553	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56029626	0.87[EUR][1000 genomes]
rs57179137	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58822685	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59406133	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59490243	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60220138	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7217852	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72836635	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72836636	0.89[EUR][1000 genomes]
rs72836639	0.89[EUR][1000 genomes]
rs72836641	0.89[EUR][1000 genomes]
rs72836642	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72836648	0.89[EUR][1000 genomes]
rs72836651	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72836653	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72836656	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72836660	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7359537	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73983025	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8078226	0.85[EUR][1000 genomes]
rs8080931	0.81[AMR][1000 genomes]
rs9303285	0.83[ASN][1000 genomes]
rs9303286	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9891694	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9892404	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9892946	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9893520	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9894625	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9896312	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9897092	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9904270	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9906409	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9908257	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9910197	0.84[EUR][1000 genomes]
rs9914531	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9916460	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9916782	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38409800-38439400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr17:38411000-38439800	Strong transcription	Fetal Stomach	stomach
3	chr17:38412200-38439800	Strong transcription	Fetal Thymus	thymus
4	chr17:38417600-38439400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr17:38426600-38440600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:38432400-38443600	Weak transcription	Fetal Brain Male	brain
7	chr17:38432800-38440000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr17:38432800-38441000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr17:38432800-38441000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr17:38433600-38439600	Weak transcription	Stomach Mucosa	stomach
11	chr17:38434200-38439600	Strong transcription	Primary hematopoietic stem cells	blood
12	chr17:38434800-38440600	Weak transcription	Small Intestine	intestine
13	chr17:38435000-38439400	Strong transcription	Adipose Nuclei	Adipose
14	chr17:38435800-38439800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:38435800-38439800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr17:38435800-38441800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr17:38435800-38442800	Weak transcription	K562	blood
18	chr17:38435800-38444200	Weak transcription	Aorta	Aorta
19	chr17:38436000-38439600	Weak transcription	NH-A	brain
20	chr17:38436000-38439800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr17:38436000-38443400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr17:38436200-38443600	Weak transcription	Psoas Muscle	Psoas
23	chr17:38436400-38439400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr17:38436400-38440200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr17:38436400-38443400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr17:38436400-38443600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr17:38436800-38443600	Weak transcription	Ovary	ovary
28	chr17:38437000-38443600	Weak transcription	Fetal Kidney	kidney
29	chr17:38437000-38443600	Weak transcription	Right Ventricle	heart
30	chr17:38437600-38440200	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr17:38437800-38439600	Weak transcription	HepG2	liver
32	chr17:38437800-38439800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr17:38437800-38439800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr17:38437800-38440000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr17:38437800-38440400	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr17:38437800-38443400	Weak transcription	Brain Angular Gyrus	brain
37	chr17:38438000-38439400	Weak transcription	NHEK	skin
38	chr17:38438000-38439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr17:38438000-38439600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:38438000-38440400	Weak transcription	Colon Smooth Muscle	Colon
41	chr17:38438000-38443400	Weak transcription	Brain Hippocampus Middle	brain
42	chr17:38438000-38443600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr17:38438000-38443600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr17:38438000-38443600	Weak transcription	Esophagus	oesophagus
45	chr17:38438200-38439600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr17:38438200-38439600	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr17:38438200-38439600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr17:38438200-38439600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr17:38438200-38439600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr17:38438200-38439600	Weak transcription	Brain Cingulate Gyrus	brain

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