Variant report

Variant	rs72836656
Chromosome Location	chr17:38426074-38426075
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38424758..38427740-chr17:38473719..38476591,2	MCF-7	breast:
2	chr17:38425473..38428234-chr17:38442335..38444807,2	K562	blood:

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000094804	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11078939	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11078940	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12051734	0.90[EUR][1000 genomes]
rs12944717	0.81[ASN][1000 genomes]
rs13706	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16965687	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1807273	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2077464	0.85[EUR][1000 genomes]
rs28537537	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28663197	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4077125	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4134994	0.85[EUR][1000 genomes]
rs4566234	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55656553	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55835834	0.86[ASN][1000 genomes]
rs56029626	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57179137	0.83[EUR][1000 genomes]
rs58822685	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59018914	0.84[ASN][1000 genomes]
rs59406133	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59490243	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59861136	0.83[ASN][1000 genomes]
rs60220138	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6503539	0.92[ASN][1000 genomes]
rs67597966	0.82[ASN][1000 genomes]
rs7217852	0.82[EUR][1000 genomes]
rs72836634	0.82[ASN][1000 genomes]
rs72836635	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72836636	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72836639	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72836640	0.85[ASN][1000 genomes]
rs72836641	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72836642	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72836648	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72836651	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836653	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836660	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7359537	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73983025	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8078204	0.84[ASN][1000 genomes]
rs8078226	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080931	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9303286	0.90[EUR][1000 genomes]
rs9891694	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9891718	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9892404	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9892946	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9893520	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9894625	0.99[EUR][1000 genomes]
rs9895163	0.94[ASN][1000 genomes]
rs9896312	0.83[AMR][1000 genomes]
rs9897092	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9904021	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9904270	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9906409	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9908034	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9908257	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910197	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9910788	0.87[ASN][1000 genomes]
rs9911840	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9912082	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9914531	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9916460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916782	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38407800-38429800	Weak transcription	Stomach Mucosa	stomach
2	chr17:38409600-38437400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr17:38409800-38434800	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr17:38409800-38439400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:38411000-38438800	Strong transcription	Fetal Intestine Small	intestine
6	chr17:38411000-38439800	Strong transcription	Fetal Stomach	stomach
7	chr17:38412000-38430200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr17:38412200-38430200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr17:38412200-38434800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:38412200-38438400	Strong transcription	Fetal Muscle Trunk	muscle
11	chr17:38412200-38439800	Strong transcription	Fetal Thymus	thymus
12	chr17:38412400-38430400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr17:38412400-38437600	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr17:38412400-38438600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr17:38412400-38438600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr17:38412600-38428600	Strong transcription	Thymus	Thymus
17	chr17:38412600-38437600	Strong transcription	Placenta	Placenta
18	chr17:38412600-38438600	Strong transcription	Fetal Intestine Large	intestine
19	chr17:38412600-38439200	Strong transcription	Fetal Muscle Leg	muscle
20	chr17:38412600-38439200	Strong transcription	Lung	lung
21	chr17:38413000-38438800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr17:38414600-38430600	Strong transcription	Primary B cells from cord blood	blood
23	chr17:38415600-38430200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr17:38416200-38436400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr17:38416600-38431000	Weak transcription	Fetal Brain Male	brain
26	chr17:38417400-38430000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr17:38417600-38439400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr17:38419600-38429800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr17:38420400-38439200	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr17:38421400-38435200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr17:38421600-38426800	Weak transcription	Hela-S3	cervix
32	chr17:38422000-38426600	Weak transcription	Esophagus	oesophagus
33	chr17:38422000-38426600	Weak transcription	GM12878-XiMat	blood
34	chr17:38422000-38429600	Weak transcription	Psoas Muscle	Psoas
35	chr17:38422000-38430000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr17:38422200-38426800	Weak transcription	HSMM	muscle
37	chr17:38422200-38427400	Weak transcription	Colonic Mucosa	Colon
38	chr17:38422200-38432200	Weak transcription	Small Intestine	intestine
39	chr17:38422200-38435400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr17:38422400-38428800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr17:38422400-38429600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr17:38422400-38429600	Weak transcription	Fetal Kidney	kidney
43	chr17:38422600-38427000	Weak transcription	HSMMtube	muscle
44	chr17:38422800-38426600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr17:38422800-38429800	Weak transcription	Pancreas	Pancrea
46	chr17:38422800-38433000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr17:38423000-38427600	Weak transcription	Colon Smooth Muscle	Colon
48	chr17:38423200-38426600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr17:38423200-38426800	Weak transcription	Fetal Lung	lung
50	chr17:38423200-38437400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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