Variant report

Variant	rs28663197
Chromosome Location	chr17:38407190-38407191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38405451..38407862-chr17:38420655..38423470,2	K562	blood:
2	chr17:38399598..38402246-chr17:38404914..38407848,2	K562	blood:
3	chr17:38405638..38407539-chr17:38415258..38417148,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11078939	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11078940	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12051734	0.81[EUR][1000 genomes]
rs12944717	0.86[ASN][1000 genomes]
rs13706	0.90[EUR][1000 genomes]
rs16965687	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1807273	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2280400	0.81[ASN][1000 genomes]
rs28537537	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34223321	0.81[ASN][1000 genomes]
rs3744806	0.81[ASN][1000 genomes]
rs4077125	0.95[ASN][1000 genomes]
rs45567834	0.81[ASN][1000 genomes]
rs4566234	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55656553	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55767073	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55835834	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55991953	0.82[ASN][1000 genomes]
rs56013073	0.81[ASN][1000 genomes]
rs56029626	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58822685	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59018914	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59406133	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59490243	0.95[ASN][1000 genomes]
rs59861136	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60220138	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61024420	0.84[ASN][1000 genomes]
rs6503539	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67597966	0.87[ASN][1000 genomes]
rs72836633	0.82[ASN][1000 genomes]
rs72836634	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72836635	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72836636	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72836639	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72836640	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72836641	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72836642	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72836648	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72836651	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72836653	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72836656	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72836660	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7359537	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73983025	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8073925	0.83[ASN][1000 genomes]
rs8078204	0.88[ASN][1000 genomes]
rs8078226	0.95[ASN][1000 genomes]
rs8080931	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8082192	0.81[ASN][1000 genomes]
rs9303286	0.81[EUR][1000 genomes]
rs9891694	0.95[ASN][1000 genomes]
rs9891718	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9892404	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9892946	0.95[ASN][1000 genomes]
rs9892973	0.81[ASN][1000 genomes]
rs9893520	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9894625	0.89[EUR][1000 genomes]
rs9895163	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9897092	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9901109	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9904021	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9904270	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9906409	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9907683	0.82[ASN][1000 genomes]
rs9908034	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9908257	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9908354	0.82[ASN][1000 genomes]
rs9910197	0.95[ASN][1000 genomes]
rs9910788	0.89[ASN][1000 genomes]
rs9911840	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9912082	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9914531	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9916460	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9916782	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38376600-38412400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr17:38376600-38416800	Weak transcription	Aorta	Aorta
3	chr17:38377000-38418400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:38377400-38408000	Weak transcription	Small Intestine	intestine
5	chr17:38377600-38412800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:38379200-38413000	Weak transcription	Pancreas	Pancrea
7	chr17:38381200-38412400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr17:38381400-38407400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr17:38381400-38407400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr17:38381400-38407400	Weak transcription	Osteobl	bone
11	chr17:38381800-38407600	Weak transcription	K562	blood
12	chr17:38381800-38408000	Weak transcription	Right Ventricle	heart
13	chr17:38382000-38407600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr17:38382000-38412400	Weak transcription	Fetal Lung	lung
15	chr17:38385400-38407600	Weak transcription	NHEK	skin
16	chr17:38386000-38407800	Weak transcription	Adipose Nuclei	Adipose
17	chr17:38389800-38407600	Weak transcription	NH-A	brain
18	chr17:38390200-38412200	Weak transcription	HepG2	liver
19	chr17:38390200-38413000	Weak transcription	Colonic Mucosa	Colon
20	chr17:38390400-38407400	Weak transcription	HUVEC	blood vessel
21	chr17:38390800-38416600	Weak transcription	Gastric	stomach
22	chr17:38391000-38407600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr17:38391000-38408000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr17:38391000-38409800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr17:38391000-38412400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr17:38391000-38412600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr17:38391000-38412600	Weak transcription	Placenta	Placenta
28	chr17:38391200-38407600	Weak transcription	A549	lung
29	chr17:38391200-38408000	Weak transcription	Ovary	ovary
30	chr17:38391200-38412200	Weak transcription	Fetal Thymus	thymus
31	chr17:38391200-38412600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr17:38391200-38412600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr17:38391200-38413600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr17:38391200-38416800	Weak transcription	Esophagus	oesophagus
35	chr17:38391400-38413600	Weak transcription	Spleen	Spleen
36	chr17:38391400-38414600	Weak transcription	Primary B cells from cord blood	blood
37	chr17:38391600-38408000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr17:38392000-38412600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr17:38392600-38412600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr17:38392800-38407400	Weak transcription	Fetal Intestine Large	intestine
41	chr17:38392800-38412200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr17:38392800-38412600	Weak transcription	Left Ventricle	heart
43	chr17:38392800-38413400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr17:38393000-38407800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr17:38393800-38412600	Weak transcription	Fetal Muscle Leg	muscle
46	chr17:38393800-38413000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr17:38394000-38407800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr17:38396400-38411000	Weak transcription	Fetal Stomach	stomach
49	chr17:38398200-38412200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr17:38398400-38407400	Weak transcription	Brain Cingulate Gyrus	brain

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