Variant report

Variant	rs13706
Chromosome Location	chr17:38457151-38457152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:38456880-38457432	K562	blood:	n/a	n/a
2	POLR2A	chr17:38456950-38457432	GM12892	blood:	n/a	n/a
3	POLR2A	chr17:38457085-38457268	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr17:38457036-38457370	HepG2	liver:	n/a	n/a
5	POLR2A	chr17:38456765-38457360	K562	blood:	n/a	n/a
6	POLR2A	chr17:38457028-38457262	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr17:38457008-38457334	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr17:38456912-38457356	HepG2	liver:	n/a	n/a
9	SMC3	chr17:38457128-38458101	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr17:38457128-38457162	HepG2	liver:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38442854..38446302-chr17:38456093..38459908,5	K562	blood:
2	chr17:38457066..38460899-chr17:38504442..38513119,13	K562	blood:
3	chr17:38455293..38459575-chr17:38570214..38574368,4	MCF-7	breast:
4	chr17:38452834..38455610-chr17:38456098..38459250,4	K562	blood:
5	chr17:38449436..38452004-chr17:38456065..38458907,3	K562	blood:
6	chr17:38455598..38459655-chr17:38495961..38498468,3	K562	blood:
7	chr17:38456693..38459299-chr17:38572579..38575149,3	MCF-7	breast:
8	chr17:38456318..38459056-chr17:38610641..38612349,2	MCF-7	breast:
9	chr17:38449436..38452276-chr17:38456065..38458453,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270145	TF binding region
ENSG00000131759	Chromatin interaction
ENSG00000094804	Chromatin interaction
ENSG00000131747	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11078940	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs12051734	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12103711	0.99[ASN][1000 genomes]
rs12946680	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16965687	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs1807273	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2077464	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2120200	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2280400	0.85[CEU][hapmap];0.87[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap]
rs28537537	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs28663197	0.90[EUR][1000 genomes]
rs35286757	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs36030243	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4077125	0.81[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs4134994	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4566234	0.81[CHD][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs55656553	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56029626	0.87[EUR][1000 genomes]
rs57179137	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58822685	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59406133	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59490243	0.85[EUR][1000 genomes]
rs60220138	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6503539	0.81[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap]
rs7217852	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72836635	0.86[EUR][1000 genomes]
rs72836636	0.89[EUR][1000 genomes]
rs72836639	0.89[EUR][1000 genomes]
rs72836641	0.89[EUR][1000 genomes]
rs72836642	0.89[EUR][1000 genomes]
rs72836648	0.89[EUR][1000 genomes]
rs72836651	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72836653	0.99[EUR][1000 genomes]
rs72836656	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72836660	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7359537	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs73983025	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8066144	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs8078226	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9303285	0.81[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.94[TSI][hapmap];0.80[YRI][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9303286	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9891694	0.85[EUR][1000 genomes]
rs9892404	0.90[EUR][1000 genomes]
rs9892946	0.81[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs9893520	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs9894625	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9896312	0.88[ASN][1000 genomes]
rs9897092	0.91[EUR][1000 genomes]
rs9901109	1.00[CEU][hapmap]
rs9904021	0.81[CHD][hapmap];0.94[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs9904270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9906409	0.91[EUR][1000 genomes]
rs9907683	0.84[CEU][hapmap]
rs9908034	0.84[CHB][hapmap]
rs9908257	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9910197	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9914531	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9916460	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9916782	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38444600-38459400	Weak transcription	Brain Angular Gyrus	brain
2	chr17:38444600-38459400	Weak transcription	Spleen	Spleen
3	chr17:38444600-38459600	Weak transcription	Brain Anterior Caudate	brain
4	chr17:38444600-38459600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:38444600-38459600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr17:38444800-38459200	Weak transcription	Fetal Intestine Large	intestine
7	chr17:38444800-38459400	Weak transcription	Fetal Kidney	kidney
8	chr17:38444800-38459400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr17:38444800-38459600	Weak transcription	Right Ventricle	heart
10	chr17:38444800-38459600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr17:38444800-38462600	Weak transcription	Esophagus	oesophagus
12	chr17:38445000-38459600	Weak transcription	Colonic Mucosa	Colon
13	chr17:38445400-38459400	Weak transcription	Primary T cells from cord blood	blood
14	chr17:38445400-38459400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:38445600-38457400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr17:38445600-38459600	Weak transcription	Primary B cells from cord blood	blood
17	chr17:38445600-38460200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr17:38445600-38462600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr17:38445800-38457200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr17:38446000-38459400	Strong transcription	Fetal Thymus	thymus
21	chr17:38446000-38461000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:38447000-38459200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr17:38447000-38459200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr17:38447000-38459600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr17:38447000-38459600	Weak transcription	Placenta	Placenta
26	chr17:38447200-38459200	Weak transcription	Liver	Liver
27	chr17:38447200-38459400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr17:38447400-38458800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr17:38447400-38459200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr17:38447400-38459200	Strong transcription	A549	lung
31	chr17:38447800-38459200	Weak transcription	Fetal Lung	lung
32	chr17:38448600-38460000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr17:38449200-38460200	Strong transcription	HepG2	liver
34	chr17:38449400-38459000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr17:38449400-38459200	Strong transcription	K562	blood
36	chr17:38449800-38459000	Strong transcription	HMEC	breast
37	chr17:38450800-38461200	Strong transcription	Dnd41	blood
38	chr17:38451600-38457400	Strong transcription	Thymus	Thymus
39	chr17:38452400-38459000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr17:38452400-38459400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr17:38452600-38458200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
42	chr17:38452600-38459600	Weak transcription	Brain Germinal Matrix	brain
43	chr17:38452600-38459800	Weak transcription	Fetal Brain Female	brain
44	chr17:38452600-38460800	Strong transcription	H1 Cell Line	embryonic stem cell
45	chr17:38452600-38461000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr17:38452800-38459600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr17:38452800-38461400	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr17:38452800-38461400	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr17:38453000-38459600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr17:38453000-38461000	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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