Variant report

Variant rs12946680
Chromosome Location chr17:38480657-38480658
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:120 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38472200-38480800 Flanking Active TSS Stomach Smooth Muscle stomach
2 chr17:38473200-38481000 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
3 chr17:38473200-38481200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr17:38473400-38481200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr17:38474800-38481000 Flanking Active TSS Primary T helper cells fromperipheralblood blood
6 chr17:38474800-38487000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
7 chr17:38475000-38481000 Flanking Active TSS Adipose Nuclei Adipose
8 chr17:38475400-38481000 Flanking Active TSS Osteobl bone
9 chr17:38475600-38480800 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
10 chr17:38475600-38482600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr17:38475600-38484600 Enhancers Placenta Placenta
12 chr17:38475600-38484600 Enhancers Spleen Spleen
13 chr17:38475600-38484800 Enhancers Stomach Mucosa stomach
14 chr17:38476200-38480800 Flanking Active TSS Rectal Mucosa Donor 29 rectum
15 chr17:38476200-38481000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr17:38476200-38481000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
17 chr17:38476200-38481000 Flanking Active TSS Duodenum Mucosa Duodenum
18 chr17:38476200-38481000 Flanking Active TSS Duodenum Smooth Muscle Duodenum
19 chr17:38476200-38481000 Flanking Active TSS Skeletal Muscle Male skeletal muscle
20 chr17:38476200-38481200 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr17:38476200-38481200 Flanking Active TSS GM12878-XiMat blood
22 chr17:38476200-38485000 Enhancers Cortex derived primary cultured neurospheres brain
23 chr17:38476400-38481200 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
24 chr17:38476600-38480800 Enhancers Pancreas Pancrea
25 chr17:38476600-38481200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr17:38477600-38484800 Enhancers Ovary ovary
27 chr17:38478200-38480800 Enhancers Brain Germinal Matrix brain
28 chr17:38478400-38483200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr17:38478600-38481200 Enhancers Gastric stomach
30 chr17:38478600-38482600 Weak transcription Aorta Aorta
31 chr17:38478800-38483400 Enhancers Hela-S3 cervix
32 chr17:38478800-38484600 Enhancers Fetal Adrenal Gland Adrenal Gland
33 chr17:38478800-38484600 Enhancers Sigmoid Colon Sigmoid Colon
34 chr17:38478800-38484600 Enhancers Small Intestine intestine
35 chr17:38479000-38481200 Enhancers Esophagus oesophagus
36 chr17:38479000-38482800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr17:38479000-38483800 Genic enhancers Fetal Stomach stomach
38 chr17:38479000-38484200 Genic enhancers Fetal Intestine Small intestine
39 chr17:38479000-38484600 Enhancers Lung lung
40 chr17:38479000-38485000 Enhancers Psoas Muscle Psoas
41 chr17:38479200-38480800 Flanking Active TSS Thymus Thymus
42 chr17:38479200-38481000 Enhancers Brain Cingulate Gyrus brain
43 chr17:38479200-38481400 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr17:38479200-38482600 Enhancers Liver Liver
45 chr17:38479200-38484200 Enhancers Fetal Intestine Large intestine
46 chr17:38479200-38494400 Weak transcription H9 Cell Line embryonic stem cell
47 chr17:38479400-38481000 Flanking Active TSS Primary T cells from cord blood blood
48 chr17:38479400-38481000 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
49 chr17:38479400-38481000 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
50 chr17:38479400-38481000 Enhancers Brain Substantia Nigra brain

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