Variant report

Variant	rs55835834
Chromosome Location	chr17:38376581-38376582
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38374160..38377020-chr17:38442777..38445786,6	K562	blood:
2	chr17:38346506..38348012-chr17:38375510..38377087,2	MCF-7	breast:
3	chr17:38335879..38338134-chr17:38374200..38376894,2	MCF-7	breast:
4	chr17:38375087..38377704-chr17:38472815..38475239,3	MCF-7	breast:
5	chr17:38374332..38376938-chr17:38443051..38445440,2	MCF-7	breast:
6	chr17:38374207..38376996-chr17:38442281..38444578,5	K562	blood:
7	chr17:38374494..38377034-chr17:38473243..38475629,2	K562	blood:

Variant related genes	Relation type
ENSG00000094804	Chromatin interaction
ENSG00000131759	Chromatin interaction
ENSG00000108352	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11078939	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11078940	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12103921	0.87[ASN][1000 genomes]
rs12944717	0.94[ASN][1000 genomes]
rs12946680	0.84[EUR][1000 genomes]
rs16965687	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2077464	0.90[EUR][1000 genomes]
rs2280400	0.88[ASN][1000 genomes]
rs28537537	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28663197	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34223321	0.88[ASN][1000 genomes]
rs35286757	0.82[EUR][1000 genomes]
rs3744806	0.88[ASN][1000 genomes]
rs4077125	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4134994	0.90[EUR][1000 genomes]
rs45567834	0.88[ASN][1000 genomes]
rs4566234	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55767073	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55772196	0.87[ASN][1000 genomes]
rs55991953	0.90[ASN][1000 genomes]
rs56013073	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56029626	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57179137	0.89[EUR][1000 genomes]
rs58822685	0.86[ASN][1000 genomes]
rs59018914	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59490243	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59861136	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60220138	0.86[ASN][1000 genomes]
rs61024420	0.92[ASN][1000 genomes]
rs6503539	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67597966	0.94[ASN][1000 genomes]
rs7217852	0.88[EUR][1000 genomes]
rs72836633	0.90[ASN][1000 genomes]
rs72836634	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72836635	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72836636	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72836639	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72836640	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72836641	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72836642	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72836648	0.94[ASN][1000 genomes]
rs72836651	0.86[ASN][1000 genomes]
rs72836653	0.86[ASN][1000 genomes]
rs72836656	0.86[ASN][1000 genomes]
rs72836660	0.86[ASN][1000 genomes]
rs7359537	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73983025	0.86[ASN][1000 genomes]
rs7405635	0.86[ASN][1000 genomes]
rs8073925	0.90[ASN][1000 genomes]
rs8078204	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8078226	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8080931	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8082192	0.88[ASN][1000 genomes]
rs9303285	0.82[EUR][1000 genomes]
rs9891694	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9891718	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9892404	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9892946	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9892973	0.88[ASN][1000 genomes]
rs9893520	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9895163	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9897092	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9904021	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9906409	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9907683	0.90[ASN][1000 genomes]
rs9908034	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9908257	0.86[ASN][1000 genomes]
rs9908354	0.90[ASN][1000 genomes]
rs9910197	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9910788	0.84[EUR][1000 genomes]
rs9911840	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9912082	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9914531	0.87[ASN][1000 genomes]
rs9916460	0.86[ASN][1000 genomes]
rs9916782	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv525796	chr17:38306365-38405037	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3325187	chr17:38374651-38377199	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38374600-38376800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr17:38374600-38376800	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr17:38374600-38376800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr17:38374600-38376800	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr17:38374600-38376800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:38374600-38376800	Active TSS	Brain Cingulate Gyrus	brain
7	chr17:38374600-38376800	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr17:38374600-38377800	Active TSS	Brain Angular Gyrus	brain
9	chr17:38374800-38376600	Active TSS	H1 Cell Line	embryonic stem cell
10	chr17:38374800-38376600	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr17:38374800-38376600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:38374800-38376600	Active TSS	Colonic Mucosa	Colon
13	chr17:38374800-38376800	Active TSS	H9 Cell Line	embryonic stem cell
14	chr17:38374800-38376800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr17:38374800-38376800	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr17:38374800-38376800	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr17:38374800-38376800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr17:38374800-38376800	Active TSS	Fetal Kidney	kidney
19	chr17:38374800-38376800	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr17:38374800-38376800	Active TSS	Rectal Smooth Muscle	rectum
21	chr17:38375000-38376600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr17:38375000-38376600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr17:38375000-38376600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:38375000-38376600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr17:38375000-38376600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr17:38375000-38376600	Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr17:38375000-38376600	Active TSS	Aorta	Aorta
28	chr17:38375000-38376600	Active TSS	Esophagus	oesophagus
29	chr17:38375000-38376600	Active TSS	Gastric	stomach
30	chr17:38375000-38376600	Active TSS	Ovary	ovary
31	chr17:38375000-38376600	Active TSS	Placenta Amnion	Placenta Amnion
32	chr17:38375000-38376600	Active TSS	Psoas Muscle	Psoas
33	chr17:38375000-38376600	Active TSS	Stomach Smooth Muscle	stomach
34	chr17:38375000-38376800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr17:38375000-38376800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr17:38375000-38376800	Active TSS	Fetal Intestine Large	intestine
37	chr17:38375000-38376800	Active TSS	Right Atrium	heart
38	chr17:38375000-38376800	Active TSS	Right Ventricle	heart
39	chr17:38375000-38376800	Active TSS	K562	blood
40	chr17:38375000-38376800	Active TSS	NHDF-Ad	bronchial
41	chr17:38375000-38377000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr17:38375000-38377200	Active TSS	HSMMtube	muscle
43	chr17:38375200-38376600	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr17:38375200-38376600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr17:38375200-38376600	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr17:38375200-38376600	Active TSS	Left Ventricle	heart
47	chr17:38375200-38376600	Active TSS	Lung	lung
48	chr17:38375200-38376800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr17:38375200-38376800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr17:38375200-38376800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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