Variant report

Variant	rs72836634
Chromosome Location	chr17:38363090-38363091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38362320..38365878-chr17:38367038..38370165,3	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11078939	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11078940	0.84[ASN][1000 genomes]
rs12103921	0.93[ASN][1000 genomes]
rs12944717	0.99[ASN][1000 genomes]
rs12946680	0.81[EUR][1000 genomes]
rs16965687	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2077464	0.88[EUR][1000 genomes]
rs2280400	0.94[ASN][1000 genomes]
rs28537537	0.88[ASN][1000 genomes]
rs28663197	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34223321	0.94[ASN][1000 genomes]
rs3744806	0.94[ASN][1000 genomes]
rs4077125	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4134994	0.88[EUR][1000 genomes]
rs45567834	0.94[ASN][1000 genomes]
rs4566234	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55767073	0.88[AMR][1000 genomes]
rs55772196	0.93[ASN][1000 genomes]
rs55835834	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55991953	0.95[ASN][1000 genomes]
rs56013073	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56029626	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57179137	0.86[EUR][1000 genomes]
rs58822685	0.82[ASN][1000 genomes]
rs59018914	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59490243	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59861136	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60220138	0.82[ASN][1000 genomes]
rs61024420	0.98[ASN][1000 genomes]
rs6503539	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67597966	1.00[ASN][1000 genomes]
rs7217852	0.85[EUR][1000 genomes]
rs72836633	0.95[ASN][1000 genomes]
rs72836635	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72836636	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72836639	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72836640	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72836641	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72836642	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72836648	0.88[ASN][1000 genomes]
rs72836651	0.82[ASN][1000 genomes]
rs72836653	0.82[ASN][1000 genomes]
rs72836656	0.82[ASN][1000 genomes]
rs72836660	0.82[ASN][1000 genomes]
rs7359537	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73983025	0.82[ASN][1000 genomes]
rs7405635	0.91[ASN][1000 genomes]
rs8073925	0.96[ASN][1000 genomes]
rs8078204	0.86[ASN][1000 genomes]
rs8078226	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8080931	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8082192	0.94[ASN][1000 genomes]
rs9891694	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9891718	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9892404	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9892946	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9892973	0.94[ASN][1000 genomes]
rs9893520	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9895163	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9897092	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9904021	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9906409	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9907683	0.95[ASN][1000 genomes]
rs9908034	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9908257	0.82[ASN][1000 genomes]
rs9908354	0.95[ASN][1000 genomes]
rs9910197	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9910788	0.81[EUR][1000 genomes]
rs9911840	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9912082	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9914531	0.83[ASN][1000 genomes]
rs9916460	0.82[ASN][1000 genomes]
rs9916782	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833444	chr17:38242823-38437280	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv525796	chr17:38306365-38405037	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38359600-38365400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr17:38359600-38365600	Weak transcription	NHDF-Ad	bronchial
3	chr17:38361000-38363600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr17:38361000-38364400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr17:38361000-38365400	Weak transcription	Osteobl	bone
6	chr17:38362400-38363200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr17:38363000-38364400	Enhancers	HepG2	liver

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