Variant report

Variant	rs57179137
Chromosome Location	chr17:38449155-38449156
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38447313..38449363-chr17:38472894..38474903,2	K562	blood:
2	chr17:38448842..38450801-chr17:38464905..38466639,2	K562	blood:
3	chr17:38449094..38451365-chr17:38452687..38454583,3	K562	blood:

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11078939	0.91[EUR][1000 genomes]
rs12051734	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12103711	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12946680	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13706	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1807273	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2077464	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120200	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35286757	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36030243	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4077125	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4134994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4566234	0.91[EUR][1000 genomes]
rs55656553	0.93[ASN][1000 genomes]
rs55835834	0.89[EUR][1000 genomes]
rs58822685	0.83[EUR][1000 genomes]
rs59018914	0.89[EUR][1000 genomes]
rs59406133	0.83[ASN][1000 genomes]
rs59490243	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60220138	0.82[EUR][1000 genomes]
rs6503539	0.89[EUR][1000 genomes]
rs7217852	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72836634	0.86[EUR][1000 genomes]
rs72836640	0.89[EUR][1000 genomes]
rs72836651	0.82[EUR][1000 genomes]
rs72836653	0.82[EUR][1000 genomes]
rs72836656	0.83[EUR][1000 genomes]
rs72836660	0.83[EUR][1000 genomes]
rs73983025	0.83[EUR][1000 genomes]
rs8078226	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8080931	0.91[EUR][1000 genomes]
rs9303285	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9303286	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9891694	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9891718	0.89[EUR][1000 genomes]
rs9892946	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9894625	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9895163	0.91[EUR][1000 genomes]
rs9896312	0.86[ASN][1000 genomes]
rs9904021	0.91[EUR][1000 genomes]
rs9904270	0.91[ASN][1000 genomes]
rs9908034	0.91[EUR][1000 genomes]
rs9908257	0.83[EUR][1000 genomes]
rs9910197	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9910788	0.84[AMR][1000 genomes]
rs9911840	0.91[EUR][1000 genomes]
rs9912082	0.91[EUR][1000 genomes]
rs9914531	0.82[EUR][1000 genomes]
rs9916460	0.83[EUR][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38444600-38451600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr17:38444600-38454600	Weak transcription	Ovary	ovary
3	chr17:38444600-38459400	Weak transcription	Brain Angular Gyrus	brain
4	chr17:38444600-38459400	Weak transcription	Spleen	Spleen
5	chr17:38444600-38459600	Weak transcription	Brain Anterior Caudate	brain
6	chr17:38444600-38459600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr17:38444600-38459600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr17:38444800-38449400	Weak transcription	Adipose Nuclei	Adipose
9	chr17:38444800-38451800	Weak transcription	Fetal Brain Female	brain
10	chr17:38444800-38459200	Weak transcription	Fetal Intestine Large	intestine
11	chr17:38444800-38459400	Weak transcription	Fetal Kidney	kidney
12	chr17:38444800-38459400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr17:38444800-38459600	Weak transcription	Right Ventricle	heart
14	chr17:38444800-38459600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr17:38444800-38462600	Weak transcription	Esophagus	oesophagus
16	chr17:38445000-38452000	Weak transcription	Fetal Intestine Small	intestine
17	chr17:38445000-38459600	Weak transcription	Colonic Mucosa	Colon
18	chr17:38445400-38449400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr17:38445400-38451800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr17:38445400-38452000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:38445400-38459400	Weak transcription	Primary T cells from cord blood	blood
22	chr17:38445400-38459400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:38445600-38449600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr17:38445600-38449600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr17:38445600-38449800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr17:38445600-38449800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr17:38445600-38450000	Strong transcription	Fetal Stomach	stomach
28	chr17:38445600-38457400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr17:38445600-38459600	Weak transcription	Primary B cells from cord blood	blood
30	chr17:38445600-38460200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr17:38445600-38462600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr17:38445800-38449600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr17:38445800-38449800	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr17:38445800-38451600	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr17:38445800-38457200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr17:38446000-38449800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr17:38446000-38451800	Weak transcription	Brain Germinal Matrix	brain
38	chr17:38446000-38452400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr17:38446000-38459400	Strong transcription	Fetal Thymus	thymus
40	chr17:38446000-38461000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:38446200-38450800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr17:38446400-38450600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr17:38446600-38451000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr17:38446800-38450000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
45	chr17:38447000-38449600	Weak transcription	NHDF-Ad	bronchial
46	chr17:38447000-38449600	Weak transcription	NHLF	lung
47	chr17:38447000-38449800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr17:38447000-38451000	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr17:38447000-38454600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr17:38447000-38454600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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