Variant report

Variant	rs6505478
Chromosome Location	chr17:33841044-33841045
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2376179	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4796094	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4796095	0.88[CEU][hapmap]
rs4796096	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6505480	0.91[AMR][1000 genomes]
rs6505482	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7221507	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7405475	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8067329	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8077695	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs986419	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9915940	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv960581	chr17:33827264-33841554	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33835400-33849600	Weak transcription	Spleen	Spleen
2	chr17:33836400-33843800	Strong transcription	Dnd41	blood
3	chr17:33837800-33846800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr17:33838000-33841600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr17:33839000-33841800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr17:33839800-33841200	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr17:33839800-33841800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:33839800-33842200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr17:33840000-33841200	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr17:33840000-33841400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:33840000-33842200	Strong transcription	GM12878-XiMat	blood
12	chr17:33840000-33843400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:33840400-33841800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr17:33840400-33841800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:33840400-33842200	Strong transcription	Primary T cells from cord blood	blood
16	chr17:33840600-33841200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:33840600-33841600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr17:33840800-33841200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr17:33840800-33841800	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr17:33841000-33841600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr17:33841000-33841800	Enhancers	Fetal Lung	lung

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