Variant report

Variant	rs7221507
Chromosome Location	chr17:33847808-33847809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2376179	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4796094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4796095	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs4796096	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6505478	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6505480	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6505482	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7405475	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8067329	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8077695	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs986419	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9915940	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv519981	chr17:33841737-33864479	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33835400-33849600	Weak transcription	Spleen	Spleen
2	chr17:33842800-33848200	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr17:33843200-33852200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr17:33846000-33848200	Genic enhancers	Primary T cells fromperipheralblood	blood
5	chr17:33846000-33848200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:33846000-33848200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:33846000-33848600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:33846200-33849600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr17:33846400-33852000	Enhancers	Primary T cells from cord blood	blood
10	chr17:33846600-33849200	Genic enhancers	Dnd41	blood
11	chr17:33846800-33848400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr17:33846800-33851600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr17:33847000-33848400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr17:33847000-33848400	Weak transcription	HMEC	breast
15	chr17:33847000-33848600	Weak transcription	NHEK	skin
16	chr17:33847000-33849200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr17:33847200-33848200	Weak transcription	GM12878-XiMat	blood
18	chr17:33847200-33848600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr17:33847400-33848000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr17:33847400-33848800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr17:33847600-33848200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr17:33847600-33848200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr17:33847600-33849200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr17:33847600-33851400	Enhancers	Primary hematopoietic stem cells	blood
25	chr17:33847600-33851600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr17:33847800-33848200	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr17:33847800-33848800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr17:33847800-33849400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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