Variant report
| Variant | rs6505808 |
|---|---|
| Chromosome Location | chr18:13349055-13349056 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10084046 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1107341 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11080646 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12456859 | 0.89[ASN][1000 genomes] |
| rs12961452 | 0.81[ASN][1000 genomes] |
| rs1454128 | 0.94[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17681406 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4602105 | 0.94[EUR][1000 genomes] |
| rs6505802 | 0.80[AMR][1000 genomes] |
| rs6505807 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7229983 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7231366 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7237577 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7242024 | 0.80[AMR][1000 genomes] |
| rs7242140 | 0.80[AMR][1000 genomes] |
| rs8092304 | 0.92[ASN][1000 genomes] |
| rs897035 | 0.90[ASN][1000 genomes] |
| rs981621 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9947830 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9948620 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9952682 | 0.80[AMR][1000 genomes] |
| rs9952836 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9957335 | 0.89[ASN][1000 genomes] |
| rs9957621 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531246 | chr18:13298774-14082028 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:13348000-13349200 | ZNF genes & repeats | Thymus | Thymus |
