Variant report

Variant	rs17681406
Chromosome Location	chr18:13361130-13361131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13361048..13363977-chr18:13367338..13370416,3	MCF-7	breast:
2	chr18:13360238..13362504-chr18:13368546..13370238,2	MCF-7	breast:
3	chr18:13359242..13361866-chr18:13361991..13364935,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10084046	0.96[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1107340	0.85[CEU][hapmap]
rs1107341	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11080646	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12456859	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12604142	0.85[JPT][hapmap]
rs12961452	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs1454128	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1869497	0.81[JPT][hapmap]
rs4602105	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6505807	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6505808	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7229983	0.90[EUR][1000 genomes]
rs7231366	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7237577	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8092304	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs897035	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs897036	0.90[JPT][hapmap]
rs981621	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9947830	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9948620	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9952836	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9957335	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9957621	0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9963572	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13351800-13374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr18:13353800-13361600	Weak transcription	Right Atrium	heart
3	chr18:13354200-13371800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr18:13354200-13372000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr18:13354400-13371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr18:13355000-13374200	Weak transcription	Dnd41	blood
7	chr18:13356400-13379200	Weak transcription	Aorta	Aorta
8	chr18:13359400-13361600	Weak transcription	Left Ventricle	heart
9	chr18:13359400-13379400	Weak transcription	Psoas Muscle	Psoas
10	chr18:13359800-13362200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr18:13359800-13364400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr18:13360000-13361400	Weak transcription	Brain Anterior Caudate	brain
13	chr18:13360000-13362200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr18:13360000-13363000	Genic enhancers	Fetal Thymus	thymus
15	chr18:13360000-13364800	Weak transcription	Spleen	Spleen
16	chr18:13360000-13366600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr18:13360200-13366800	Weak transcription	Brain Substantia Nigra	brain
18	chr18:13360400-13361400	Weak transcription	Fetal Heart	heart
19	chr18:13360400-13361800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr18:13360400-13362000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr18:13361000-13361400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr18:13361000-13361400	Weak transcription	Right Ventricle	heart
23	chr18:13361000-13361600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr18:13361000-13363200	Genic enhancers	Thymus	Thymus

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