Variant report

Variant	rs1107340
Chromosome Location	chr18:13362403-13362404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:13361048..13363977-chr18:13367338..13370416,3	MCF-7	breast:
2	chr18:13360238..13362504-chr18:13368546..13370238,2	MCF-7	breast:
3	chr18:13359242..13361866-chr18:13361991..13364935,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM210A-9	chr18:13362202-13362582	ENSG00000267393.1

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10084046	0.89[CEU][hapmap]
rs11080642	0.89[JPT][hapmap]
rs11080646	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs1225	0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12960927	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17681406	0.85[CEU][hapmap]
rs2085049	0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2276392	0.82[JPT][hapmap]
rs2867877	0.85[JPT][hapmap]
rs2867878	0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35664252	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35815061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3960634	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4602105	0.83[ASN][1000 genomes]
rs4797760	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4797761	0.86[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4797764	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4797765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6505810	0.81[JPT][hapmap]
rs7227361	0.91[JPT][hapmap]
rs7231366	0.88[CEU][hapmap]
rs7237577	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs981621	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs9946524	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs9948620	0.84[CEU][hapmap]
rs9954359	0.82[JPT][hapmap]
rs9954816	0.81[ASN][1000 genomes]
rs9957334	0.83[ASN][1000 genomes]
rs9960893	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13351800-13374800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr18:13354200-13371800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr18:13354200-13372000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr18:13354400-13371200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr18:13355000-13374200	Weak transcription	Dnd41	blood
6	chr18:13356400-13379200	Weak transcription	Aorta	Aorta
7	chr18:13359400-13379400	Weak transcription	Psoas Muscle	Psoas
8	chr18:13359800-13364400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr18:13360000-13363000	Genic enhancers	Fetal Thymus	thymus
10	chr18:13360000-13364800	Weak transcription	Spleen	Spleen
11	chr18:13360000-13366600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr18:13360200-13366800	Weak transcription	Brain Substantia Nigra	brain
13	chr18:13361000-13363200	Genic enhancers	Thymus	Thymus
14	chr18:13361400-13362600	Enhancers	Brain Anterior Caudate	brain
15	chr18:13361400-13362600	Enhancers	Fetal Heart	heart
16	chr18:13361400-13362600	Enhancers	Right Ventricle	heart
17	chr18:13361600-13362800	Enhancers	Right Atrium	heart
18	chr18:13361600-13365800	Enhancers	Fetal Brain Male	brain
19	chr18:13361600-13369400	Weak transcription	Pancreas	Pancrea
20	chr18:13361800-13362600	Enhancers	Lung	lung
21	chr18:13361800-13363600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr18:13361800-13364800	Weak transcription	Fetal Brain Female	brain
23	chr18:13362000-13367200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr18:13362000-13374600	Weak transcription	Fetal Muscle Leg	muscle
25	chr18:13362200-13363200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr18:13362200-13363200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr18:13362400-13362800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr18:13362400-13363200	Weak transcription	Gastric	stomach
29	chr18:13362400-13364800	Weak transcription	Left Ventricle	heart

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