Variant report

Variant	rs6506966
Chromosome Location	chr18:29850296-29850297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29847813..29851392-chr18:29854747..29858581,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16962939	0.80[CEU][hapmap]
rs8098071	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv528846	chr18:29832147-29890042	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29835200-29861600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:29837400-29867200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr18:29838600-29851400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr18:29838600-29851600	Weak transcription	Stomach Mucosa	stomach
5	chr18:29839800-29871800	Weak transcription	HSMMtube	muscle
6	chr18:29843000-29867000	Weak transcription	Brain Angular Gyrus	brain
7	chr18:29845200-29852000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr18:29845200-29857400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr18:29845400-29851800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr18:29846000-29867000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr18:29846200-29850400	Weak transcription	Placenta	Placenta
12	chr18:29846200-29850600	Strong transcription	Brain Inferior Temporal Lobe	brain
13	chr18:29846400-29851600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr18:29846600-29851600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr18:29846600-29851600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr18:29846800-29850600	Strong transcription	Liver	Liver
17	chr18:29847000-29851400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr18:29847000-29856600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr18:29847400-29850400	Strong transcription	Stomach Smooth Muscle	stomach
20	chr18:29847400-29850600	Weak transcription	HSMM	muscle
21	chr18:29847600-29850400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr18:29847600-29850400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr18:29847600-29850400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr18:29847600-29850400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr18:29847600-29850400	Strong transcription	Fetal Stomach	stomach
26	chr18:29847600-29850400	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr18:29847600-29850600	Strong transcription	Gastric	stomach
28	chr18:29847600-29850600	Strong transcription	Pancreas	Pancrea
29	chr18:29847600-29850600	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr18:29847800-29850400	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr18:29847800-29850600	Strong transcription	Fetal Muscle Leg	muscle
32	chr18:29848000-29850400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr18:29848000-29850400	Strong transcription	Aorta	Aorta
34	chr18:29848000-29850400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr18:29848000-29850400	Strong transcription	Ovary	ovary
36	chr18:29848000-29850600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr18:29848000-29850600	Strong transcription	Fetal Intestine Small	intestine
38	chr18:29848000-29852200	Enhancers	Fetal Brain Male	brain
39	chr18:29848200-29850400	Strong transcription	Colonic Mucosa	Colon
40	chr18:29848200-29850400	Strong transcription	Left Ventricle	heart
41	chr18:29848200-29852400	Enhancers	Fetal Brain Female	brain
42	chr18:29848200-29863600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr18:29848400-29851800	Weak transcription	Fetal Heart	heart
44	chr18:29848400-29860200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr18:29848600-29850400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr18:29848600-29857400	Weak transcription	HepG2	liver
47	chr18:29848600-29867200	Weak transcription	Lung	lung
48	chr18:29848800-29851800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr18:29848800-29866600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr18:29849400-29856800	Weak transcription	Right Ventricle	heart

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