Variant report

Variant	rs8098071
Chromosome Location	chr18:29880845-29880846
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6506966	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv528846	chr18:29832147-29890042	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29864600-29881200	Weak transcription	Colon Smooth Muscle	Colon
2	chr18:29867800-29881800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr18:29868000-29888800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr18:29868000-29888800	Weak transcription	Brain Hippocampus Middle	brain
5	chr18:29868000-29889000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:29868000-29889000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr18:29868200-29889800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr18:29868200-29923800	Weak transcription	Gastric	stomach
9	chr18:29873400-29881400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr18:29876400-29881400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:29877200-29881000	Weak transcription	A549	lung
12	chr18:29877400-29881400	Weak transcription	Fetal Heart	heart
13	chr18:29877400-29882000	Weak transcription	Small Intestine	intestine
14	chr18:29878400-29882000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr18:29878400-29888800	Weak transcription	Liver	Liver
16	chr18:29878400-29890000	Weak transcription	Fetal Kidney	kidney
17	chr18:29878400-29896000	Weak transcription	Brain Anterior Caudate	brain
18	chr18:29878600-29881200	Weak transcription	Fetal Stomach	stomach
19	chr18:29878600-29881200	Weak transcription	Stomach Mucosa	stomach
20	chr18:29878600-29881400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr18:29878600-29881400	Weak transcription	Adipose Nuclei	Adipose
22	chr18:29878600-29881600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr18:29878600-29888000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr18:29878600-29890200	Weak transcription	Brain Angular Gyrus	brain
25	chr18:29878800-29882000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr18:29878800-29890000	Weak transcription	Fetal Brain Male	brain
27	chr18:29879400-29881800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr18:29880400-29881600	Enhancers	Aorta	Aorta
29	chr18:29880400-29882200	Enhancers	NHDF-Ad	bronchial
30	chr18:29880800-29881200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr18:29880800-29882800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr18:29880800-29883000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr18:29880800-29897000	Weak transcription	Lung	lung

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