Variant report

Variant	rs6507725
Chromosome Location	chr18:44790703-44790704
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs61401225	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956108	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956112	1.00[EUR][1000 genomes]
rs73956113	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73956118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8094746	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv828226	chr18:44762014-44801196	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1819372	chr18:44774673-44799515	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44787000-44791000	Bivalent Enhancer	Brain Germinal Matrix	brain
2	chr18:44787200-44791000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr18:44787400-44791000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
4	chr18:44788000-44791000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr18:44788200-44790800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
6	chr18:44788800-44790800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
7	chr18:44788800-44790800	Bivalent Enhancer	Spleen	Spleen
8	chr18:44789000-44790800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:44789200-44790800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
10	chr18:44789400-44790800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
11	chr18:44789400-44791200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr18:44789600-44790800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr18:44789600-44790800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr18:44789600-44790800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr18:44789600-44790800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr18:44789600-44790800	Bivalent/Poised TSS	HSMMtube	muscle
17	chr18:44789600-44791000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
18	chr18:44789600-44791200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
19	chr18:44789600-44791200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
20	chr18:44789600-44791600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr18:44789600-44791600	Bivalent/Poised TSS	NH-A	brain
22	chr18:44789600-44791800	Bivalent/Poised TSS	HSMM	muscle
23	chr18:44789800-44790800	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr18:44789800-44790800	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
25	chr18:44789800-44790800	Bivalent Enhancer	Lung	lung
26	chr18:44789800-44791000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
27	chr18:44790000-44790800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr18:44790000-44790800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
29	chr18:44790000-44790800	Flanking Active TSS	Right Atrium	heart
30	chr18:44790000-44790800	Bivalent/Poised TSS	NHLF	lung
31	chr18:44790000-44791400	Bivalent/Poised TSS	NHDF-Ad	bronchial
32	chr18:44790200-44790800	Bivalent Enhancer	Brain Anterior Caudate	brain
33	chr18:44790200-44791000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr18:44790200-44791800	Active TSS	Muscle Satellite Cultured Cells	--
35	chr18:44790400-44790800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
36	chr18:44790400-44790800	Bivalent Enhancer	Placenta	Placenta
37	chr18:44790400-44790800	Enhancers	Gastric	stomach
38	chr18:44790400-44790800	Bivalent Enhancer	Left Ventricle	heart
39	chr18:44790400-44790800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
40	chr18:44790400-44791000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr18:44790400-44791000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr18:44790400-44791400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr18:44790400-44791400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr18:44790600-44790800	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr18:44790600-44790800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr18:44790600-44790800	Enhancers	Pancreas	Pancrea
47	chr18:44790600-44790800	Bivalent Enhancer	Psoas Muscle	Psoas
48	chr18:44790600-44790800	Flanking Bivalent TSS/Enh	Right Ventricle	heart
49	chr18:44790600-44791000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
50	chr18:44790600-44791400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

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