Variant report

Variant	rs73956112
Chromosome Location	chr18:44781096-44781097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16948987	0.85[AMR][1000 genomes]
rs16950560	1.00[AMR][1000 genomes]
rs34390940	0.83[AMR][1000 genomes]
rs61401225	1.00[EUR][1000 genomes]
rs6507725	1.00[EUR][1000 genomes]
rs73956108	1.00[EUR][1000 genomes]
rs73956113	1.00[EUR][1000 genomes]
rs73956118	1.00[EUR][1000 genomes]
rs8094746	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv828226	chr18:44762014-44801196	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1794744	chr18:44774077-44788908	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1797427	chr18:44774077-44788908	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1835264	chr18:44774077-44788908	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1839014	chr18:44774077-44788908	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1819372	chr18:44774673-44799515	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44778400-44781400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
2	chr18:44779600-44782800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:44780200-44781400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:44780800-44781200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr18:44780800-44781200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr18:44780800-44781400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
7	chr18:44781000-44781200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr18:44781000-44781200	Bivalent Enhancer	Fetal Brain Female	brain
9	chr18:44781000-44781200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr18:44781000-44785200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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