Variant report

Variant	rs6507819
Chromosome Location	chr18:45688517-45688518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45680562..45685568-chr18:45685976..45689929,7	MCF-7	breast:
2	chr18:45686791..45690423-chr18:45708029..45713174,4	MCF-7	breast:
3	chr18:45687212..45689551-chr18:45752864..45754963,2	MCF-7	breast:
4	chr18:45667202..45669111-chr18:45687952..45689852,2	MCF-7	breast:
5	chr18:45563980..45564622-chr18:45688018..45688776,3	MCF-7	breast:
6	chr18:45688292..45689799-chr18:45738881..45741560,2	MCF-7	breast:
7	chr18:45687841..45689845-chr18:45747835..45750827,4	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4429360	0.80[EUR][1000 genomes]
rs8085875	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45687200-45688600	Active TSS	Duodenum Mucosa	Duodenum
2	chr18:45687200-45688600	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr18:45687200-45688600	Active TSS	A549	lung
4	chr18:45687400-45688600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr18:45687400-45688600	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr18:45687400-45688600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr18:45687400-45688600	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr18:45687400-45688600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr18:45687400-45688600	Active TSS	Aorta	Aorta
10	chr18:45687400-45688600	Active TSS	Rectal Mucosa Donor 31	rectum
11	chr18:45687400-45688600	Active TSS	Right Atrium	heart
12	chr18:45687400-45688600	Active TSS	HSMM	muscle
13	chr18:45687400-45688600	Active TSS	NHEK	skin
14	chr18:45687400-45688800	Active TSS	H9 Cell Line	embryonic stem cell
15	chr18:45687400-45688800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr18:45687400-45688800	Active TSS	Brain Cingulate Gyrus	brain
17	chr18:45687600-45688600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr18:45687600-45688600	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr18:45687600-45688600	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr18:45687600-45688600	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr18:45687600-45688600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr18:45687600-45688600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr18:45687600-45688600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr18:45687600-45688600	Active TSS	Brain Angular Gyrus	brain
25	chr18:45687600-45688600	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr18:45687600-45688600	Active TSS	Colon Smooth Muscle	Colon
27	chr18:45687600-45688600	Active TSS	Fetal Brain Female	brain
28	chr18:45687600-45688600	Active TSS	Fetal Intestine Large	intestine
29	chr18:45687600-45688600	Active TSS	Fetal Intestine Small	intestine
30	chr18:45687600-45688600	Active TSS	Fetal Lung	lung
31	chr18:45687600-45688600	Active TSS	Gastric	stomach
32	chr18:45687600-45688600	Active TSS	Left Ventricle	heart
33	chr18:45687600-45688600	Active TSS	Ovary	ovary
34	chr18:45687600-45688600	Active TSS	Rectal Smooth Muscle	rectum
35	chr18:45687600-45688600	Active TSS	Right Ventricle	heart
36	chr18:45687600-45688600	Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr18:45687600-45688600	Active TSS	Hela-S3	cervix
38	chr18:45687600-45688600	Active TSS	HUVEC	blood vessel
39	chr18:45687600-45688600	Active TSS	NH-A	brain
40	chr18:45687600-45688600	Active TSS	NHLF	lung
41	chr18:45687600-45688800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr18:45687600-45688800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr18:45687600-45688800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr18:45687600-45688800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
45	chr18:45687600-45688800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr18:45687600-45688800	Active TSS	Pancreatic Islets	Pancreatic Islet
47	chr18:45687600-45688800	Bivalent Enhancer	Fetal Thymus	thymus
48	chr18:45687600-45688800	Bivalent/Poised TSS	Thymus	Thymus
49	chr18:45687600-45689000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
50	chr18:45687800-45688600	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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