Variant report

Variant	rs8085875
Chromosome Location	chr18:45659367-45659368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45658580..45662145-chr18:45664603..45667810,4	MCF-7	breast:
2	chr18:45650799..45652608-chr18:45657316..45660495,3	MCF-7	breast:
3	chr18:45657690..45659673-chr18:45662956..45666549,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184828	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10853562	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11082653	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11082655	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4289063	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4319836	0.88[AMR][1000 genomes]
rs4429360	0.85[ASN][1000 genomes]
rs4462674	0.88[AMR][1000 genomes]
rs4940274	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4940306	0.88[AMR][1000 genomes]
rs4940309	0.88[AMR][1000 genomes]
rs4940310	0.88[AMR][1000 genomes]
rs6417101	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6507812	0.81[EUR][1000 genomes]
rs6507816	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6507817	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6507821	0.92[CEU][hapmap];0.88[AMR][1000 genomes]
rs6507822	0.88[AMR][1000 genomes]
rs7231864	1.00[ASW][hapmap];0.93[CEU][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes]
rs8093876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8085875	RPL17	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45646200-45662000	Weak transcription	Right Atrium	heart
2	chr18:45650000-45659400	Weak transcription	Lung	lung
3	chr18:45650600-45660600	Weak transcription	Fetal Intestine Small	intestine
4	chr18:45651400-45659400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr18:45656400-45659600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:45656600-45659400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr18:45656600-45659400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr18:45656600-45659400	Weak transcription	Placenta	Placenta
9	chr18:45656600-45659400	Weak transcription	Ovary	ovary
10	chr18:45656800-45661200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr18:45657000-45659400	Weak transcription	Esophagus	oesophagus
12	chr18:45658000-45659400	Weak transcription	Liver	Liver
13	chr18:45658600-45659400	Enhancers	Hela-S3	cervix
14	chr18:45658600-45659800	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr18:45658800-45661000	Enhancers	Fetal Kidney	kidney
16	chr18:45658800-45662000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr18:45659000-45659400	Enhancers	Colonic Mucosa	Colon
18	chr18:45659000-45659400	Enhancers	Stomach Mucosa	stomach
19	chr18:45659000-45660200	Enhancers	Fetal Muscle Leg	muscle
20	chr18:45659000-45660600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr18:45659000-45660600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr18:45659000-45661400	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr18:45659200-45659800	Enhancers	Gastric	stomach
24	chr18:45659200-45660400	Enhancers	Fetal Intestine Large	intestine
25	chr18:45659200-45660800	Enhancers	Fetal Stomach	stomach
26	chr18:45659200-45661200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links