Variant report

Variant	rs4940310
Chromosome Location	chr18:45703068-45703069
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10853562	0.92[CEU][hapmap];0.86[AMR][1000 genomes]
rs11082655	0.88[AMR][1000 genomes]
rs4289063	0.88[AMR][1000 genomes]
rs4319836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4441342	1.00[YRI][hapmap]
rs4462674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4940306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4940309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6417101	0.82[AMR][1000 genomes]
rs6507821	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6507822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7231864	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8085875	0.92[CEU][hapmap];0.88[AMR][1000 genomes]
rs8093876	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv909617	chr18:45702060-45749905	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45693400-45704400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:45694600-45705200	Weak transcription	Right Ventricle	heart
3	chr18:45696000-45707400	Weak transcription	Gastric	stomach
4	chr18:45697000-45703200	Weak transcription	Fetal Intestine Large	intestine
5	chr18:45698200-45703400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr18:45700000-45703200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr18:45700200-45703200	Weak transcription	Fetal Intestine Small	intestine
8	chr18:45700400-45704000	Weak transcription	Esophagus	oesophagus
9	chr18:45702600-45720600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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