Variant report

Variant	rs7231864
Chromosome Location	chr18:45698356-45698357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10853562	0.93[CEU][hapmap];0.86[AMR][1000 genomes]
rs11082655	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4289063	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4319836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4441342	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4462674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4940306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4940309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4940310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6417101	0.82[AMR][1000 genomes]
rs6507821	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6507822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8085875	1.00[ASW][hapmap];0.93[CEU][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.88[AMR][1000 genomes]
rs8093876	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7231864	RPL17	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45688400-45699200	Enhancers	Spleen	Spleen
2	chr18:45693400-45704400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45693800-45699800	Weak transcription	Esophagus	oesophagus
4	chr18:45694600-45705200	Weak transcription	Right Ventricle	heart
5	chr18:45695600-45699000	Weak transcription	Pancreas	Pancrea
6	chr18:45695600-45699600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr18:45695600-45699800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr18:45695800-45699800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr18:45696000-45707400	Weak transcription	Gastric	stomach
10	chr18:45696600-45699800	Weak transcription	Fetal Intestine Small	intestine
11	chr18:45696800-45698600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr18:45697000-45703200	Weak transcription	Fetal Intestine Large	intestine
13	chr18:45698200-45703400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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