Variant report

Variant	rs10853562
Chromosome Location	chr18:45663684-45663685
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11082653	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11082655	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4289063	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4319836	0.86[AMR][1000 genomes]
rs4429360	0.88[ASN][1000 genomes]
rs4462674	0.86[AMR][1000 genomes]
rs4940274	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4940306	0.86[AMR][1000 genomes]
rs4940309	0.86[AMR][1000 genomes]
rs4940310	0.86[AMR][1000 genomes]
rs6417101	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6507816	0.90[EUR][1000 genomes]
rs6507817	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6507821	0.92[CEU][hapmap];0.86[AMR][1000 genomes]
rs6507822	0.86[AMR][1000 genomes]
rs7231864	0.93[CEU][hapmap];0.86[AMR][1000 genomes]
rs8085875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8093876	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9954047	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3337566	chr18:45661104-45665102	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45660800-45665000	Active TSS	Rectal Smooth Muscle	rectum
2	chr18:45661400-45663800	Active TSS	Esophagus	oesophagus
3	chr18:45661800-45664000	Active TSS	Colonic Mucosa	Colon
4	chr18:45662000-45663800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
5	chr18:45662000-45663800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr18:45662000-45663800	Active TSS	Brain Anterior Caudate	brain
7	chr18:45662000-45663800	Active TSS	Gastric	stomach
8	chr18:45662000-45664000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr18:45662000-45664000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
10	chr18:45662000-45664000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr18:45662000-45664000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
12	chr18:45662000-45664000	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr18:45662000-45664000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
14	chr18:45662000-45664000	Active TSS	Fetal Kidney	kidney
15	chr18:45662000-45664000	Active TSS	Rectal Mucosa Donor 31	rectum
16	chr18:45662000-45664200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr18:45662200-45663800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
18	chr18:45662200-45663800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr18:45662200-45663800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr18:45662200-45663800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr18:45662200-45663800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:45662200-45663800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
23	chr18:45662200-45663800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr18:45662200-45663800	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr18:45662200-45663800	Active TSS	Stomach Mucosa	stomach
26	chr18:45662200-45664000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
27	chr18:45662400-45663800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr18:45662400-45663800	Active TSS	Hela-S3	cervix
29	chr18:45662400-45663800	Flanking Active TSS	HMEC	breast
30	chr18:45662600-45663800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
31	chr18:45662600-45663800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr18:45662600-45663800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr18:45662600-45663800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr18:45662600-45663800	Active TSS	Ovary	ovary
35	chr18:45662600-45663800	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
36	chr18:45662600-45664000	Active TSS	Lung	lung
37	chr18:45662800-45663800	Active TSS	HSMMtube	muscle
38	chr18:45662800-45664200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr18:45662800-45664200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
40	chr18:45663000-45663800	Bivalent/Poised TSS	Fetal Brain Female	brain
41	chr18:45663000-45663800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
42	chr18:45663200-45663800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
43	chr18:45663200-45663800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
44	chr18:45663200-45663800	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr18:45663200-45663800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
46	chr18:45663200-45664000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr18:45663400-45663800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
48	chr18:45663400-45663800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
49	chr18:45663400-45663800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
50	chr18:45663400-45663800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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