Variant report

Variant	rs11082653
Chromosome Location	chr18:45656533-45656534
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10853562	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11082655	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4289063	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4429360	0.82[ASN][1000 genomes]
rs4940274	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6417101	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6507812	0.83[EUR][1000 genomes]
rs6507816	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6507817	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8085875	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8093876	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45642400-45657200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr18:45646200-45662000	Weak transcription	Right Atrium	heart
3	chr18:45650000-45659400	Weak transcription	Lung	lung
4	chr18:45650600-45660600	Weak transcription	Fetal Intestine Small	intestine
5	chr18:45651200-45659000	Weak transcription	Colonic Mucosa	Colon
6	chr18:45651400-45659400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr18:45652400-45658600	Weak transcription	Hela-S3	cervix
8	chr18:45653600-45659200	Weak transcription	Gastric	stomach
9	chr18:45653800-45657000	Enhancers	Fetal Muscle Leg	muscle
10	chr18:45654200-45658600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr18:45655200-45657000	Enhancers	Liver	Liver
12	chr18:45655400-45656600	Enhancers	Placenta	Placenta
13	chr18:45655600-45656600	Enhancers	Ovary	ovary
14	chr18:45655600-45656600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr18:45655600-45656800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr18:45655600-45657000	Enhancers	Fetal Kidney	kidney
17	chr18:45655600-45659000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr18:45655800-45656600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr18:45655800-45656600	Enhancers	Fetal Muscle Trunk	muscle
20	chr18:45655800-45656600	Enhancers	Stomach Mucosa	stomach
21	chr18:45655800-45656800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr18:45655800-45656800	Enhancers	HSMMtube	muscle
23	chr18:45655800-45657000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr18:45656000-45656600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr18:45656200-45656600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr18:45656200-45656600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr18:45656200-45656600	Enhancers	Fetal Stomach	stomach
28	chr18:45656200-45656800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr18:45656200-45657000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr18:45656200-45658200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr18:45656400-45656600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr18:45656400-45656800	Weak transcription	Esophagus	oesophagus
33	chr18:45656400-45659600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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