Variant report

Variant	rs11082655
Chromosome Location	chr18:45675605-45675606
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10853562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11082653	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4289063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4319836	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4429360	0.93[ASN][1000 genomes]
rs4462674	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4940306	0.88[AMR][1000 genomes]
rs4940309	0.88[AMR][1000 genomes]
rs4940310	0.88[AMR][1000 genomes]
rs6417101	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6507816	0.83[EUR][1000 genomes]
rs6507817	0.83[EUR][1000 genomes]
rs6507821	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6507822	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7231864	0.93[CEU][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8085875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8093876	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv517835	chr18:45672940-45678479	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45663800-45679800	Weak transcription	Aorta	Aorta
2	chr18:45669400-45685200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45669600-45678200	Weak transcription	Spleen	Spleen
4	chr18:45670400-45678000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:45671600-45675800	Weak transcription	Placenta	Placenta
6	chr18:45672000-45679200	Weak transcription	Esophagus	oesophagus
7	chr18:45674600-45676000	Enhancers	Hela-S3	cervix
8	chr18:45675400-45675800	Enhancers	Gastric	stomach
9	chr18:45675400-45676000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr18:45675400-45676000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr18:45675400-45676000	Enhancers	Ovary	ovary
12	chr18:45675400-45677400	Weak transcription	Stomach Mucosa	stomach
13	chr18:45675600-45677600	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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