Variant report

Variant	rs6417101
Chromosome Location	chr18:45672819-45672820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10853562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11082653	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11082655	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4289063	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4319836	0.82[AMR][1000 genomes]
rs4429360	0.97[ASN][1000 genomes]
rs4462674	0.82[AMR][1000 genomes]
rs4940274	0.82[EUR][1000 genomes]
rs4940306	0.82[AMR][1000 genomes]
rs4940309	0.82[AMR][1000 genomes]
rs4940310	0.82[AMR][1000 genomes]
rs6507816	0.82[EUR][1000 genomes]
rs6507817	0.83[EUR][1000 genomes]
rs6507821	0.92[CEU][hapmap];0.82[AMR][1000 genomes]
rs6507822	0.82[AMR][1000 genomes]
rs7231864	0.93[CEU][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs8085875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8093876	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6417101	RPL17	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45663800-45679800	Weak transcription	Aorta	Aorta
2	chr18:45669400-45685200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45669600-45678200	Weak transcription	Spleen	Spleen
4	chr18:45669800-45675000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr18:45670000-45674800	Weak transcription	Stomach Mucosa	stomach
6	chr18:45670200-45675400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr18:45670400-45674600	Weak transcription	Hela-S3	cervix
8	chr18:45670400-45678000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr18:45671600-45675800	Weak transcription	Placenta	Placenta
10	chr18:45672000-45679200	Weak transcription	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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