Variant report

Variant	rs6509518
Chromosome Location	chr19:51583003-51583004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10500304	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2569489	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2569491	0.95[YRI][hapmap]
rs35287116	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51580000-51587800	Weak transcription	Right Atrium	heart
2	chr19:51580600-51586200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr19:51582600-51583200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr19:51582600-51583200	Enhancers	Esophagus	oesophagus
5	chr19:51582600-51583200	Enhancers	Gastric	stomach
6	chr19:51582600-51583200	Enhancers	Pancreas	Pancrea
7	chr19:51582600-51583200	Enhancers	Right Ventricle	heart
8	chr19:51582800-51583200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr19:51582800-51583200	Enhancers	HMEC	breast
10	chr19:51582800-51583400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr19:51583000-51583200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr19:51583000-51583200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr19:51583000-51583200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr19:51583000-51583200	Enhancers	Brain Anterior Caudate	brain
15	chr19:51583000-51583400	Enhancers	NHEK	skin
16	chr19:51583000-51589600	Weak transcription	Spleen	Spleen
17	chr19:51583000-51604200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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