Variant report

Variant	rs2569491
Chromosome Location	chr19:51584916-51584917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10445581	0.94[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10500304	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.93[ASN][1000 genomes]
rs16988866	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs17658926	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap]
rs1880416	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2569489	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.95[ASN][1000 genomes]
rs35287116	1.00[ASN][1000 genomes]
rs6509518	0.95[YRI][hapmap]
rs7351079	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs9304708	0.94[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2569491	ZNF415	cis	cerebellum	SCAN
rs2569491	EPN1	cis	cerebellum	SCAN
rs2569491	ZNF71	cis	cerebellum	SCAN
rs2569491	ZNF587	cis	cerebellum	SCAN
rs2569491	ZNF415	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51580000-51587800	Weak transcription	Right Atrium	heart
2	chr19:51580600-51586200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr19:51583000-51589600	Weak transcription	Spleen	Spleen
4	chr19:51583000-51604200	Weak transcription	Left Ventricle	heart
5	chr19:51583200-51585800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:51583200-51586400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr19:51583200-51589000	Weak transcription	Pancreas	Pancrea
8	chr19:51583200-51589600	Weak transcription	Esophagus	oesophagus
9	chr19:51583200-51595400	Weak transcription	Gastric	stomach
10	chr19:51583200-51597000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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