Variant report

Variant	rs7351079
Chromosome Location	chr19:51574038-51574039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000167759	Chromatin interaction
ENSG00000167757	Chromatin interaction
ENSG00000167755	Chromatin interaction
ENSG00000129437	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10445581	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs10500304	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs16988866	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs17658926	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs2569489	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs2569491	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs9304708	0.87[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv520705	chr19:51574038-51575424	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7351079	ZNF701	cis	parietal	SCAN
rs7351079	ZNF841	cis	cerebellum	SCAN
rs7351079	ZNF582	cis	cerebellum	SCAN
rs7351079	ZNF415	cis	cerebellum	SCAN
rs7351079	MGC2752	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51573200-51574800	Enhancers	HMEC	breast
2	chr19:51573400-51574600	Enhancers	K562	blood
3	chr19:51573600-51574600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr19:51573600-51574600	Enhancers	NHEK	skin
5	chr19:51573600-51574800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:51573600-51574800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:51573800-51574200	Enhancers	Pancreas	Pancrea
8	chr19:51573800-51574800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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