Variant report
Variant | rs6514583 |
---|---|
Chromosome Location | chr20:15571167-15571168 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1001105 | 1.00[JPT][hapmap] |
rs10485531 | 1.00[JPT][hapmap] |
rs12624497 | 1.00[JPT][hapmap] |
rs12624787 | 1.00[JPT][hapmap];0.83[EUR][1000 genomes] |
rs12624807 | 0.83[EUR][1000 genomes] |
rs12626138 | 1.00[JPT][hapmap];0.83[EUR][1000 genomes] |
rs16996153 | 1.00[JPT][hapmap];0.83[EUR][1000 genomes] |
rs200766 | 1.00[JPT][hapmap] |
rs6043389 | 0.83[EUR][1000 genomes] |
rs6105443 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |