Variant report
| Variant | rs6522520 |
|---|---|
| Chromosome Location | chrX:91575474-91575475 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs2573785 | 1.00[CHB][hapmap] |
| rs2574080 | 1.00[CHB][hapmap];0.87[JPT][hapmap] |
| rs2755052 | 1.00[CHB][hapmap] |
| rs5984169 | 1.00[CEU][hapmap] |
| rs6618944 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv432350 | chrX:91158935-91590765 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv532885 | chrX:91428554-92377178 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv1001030 | chrX:91539006-92375367 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv15966 | chrX:91540570-92371792 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
