Variant report

Variant	rs6524017
Chromosome Location	chrX:79934111-79934112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12012250	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12012589	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6616701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6622355	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6622362	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916218	chrX:79377399-80230929	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv532882	chrX:79884715-80017999	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv524776	chrX:79903169-80012807	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv533969	chrX:79915477-79989648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:79921400-79934200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chrX:79922800-79937200	Weak transcription	HSMM	muscle
3	chrX:79922800-79949800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chrX:79923000-79934200	Weak transcription	Adipose Nuclei	Adipose
5	chrX:79923200-79935600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chrX:79925600-79943000	Weak transcription	Osteobl	bone
7	chrX:79926200-79978000	Weak transcription	NH-A	brain
8	chrX:79928600-79955000	Weak transcription	Hela-S3	cervix
9	chrX:79928600-79962000	Weak transcription	Fetal Brain Female	brain
10	chrX:79928800-79954000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chrX:79929000-79934400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chrX:79929000-79949600	Weak transcription	Brain Angular Gyrus	brain
13	chrX:79929600-79935800	Weak transcription	Placenta	Placenta
14	chrX:79929800-79949400	Weak transcription	Fetal Muscle Trunk	muscle
15	chrX:79930000-79934200	Weak transcription	Fetal Intestine Large	intestine
16	chrX:79930200-79934400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chrX:79930400-79935800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chrX:79930400-79936200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chrX:79930400-79936600	Weak transcription	Fetal Lung	lung
20	chrX:79930400-79943600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chrX:79930400-79945400	Weak transcription	NHLF	lung
22	chrX:79930400-79949600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chrX:79930400-79953400	Weak transcription	Rectal Smooth Muscle	rectum
24	chrX:79930600-79936000	Weak transcription	HSMMtube	muscle
25	chrX:79930600-79943000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chrX:79930600-79949400	Weak transcription	Esophagus	oesophagus
27	chrX:79930600-79949400	Weak transcription	Fetal Intestine Small	intestine
28	chrX:79930600-79949400	Weak transcription	Thymus	Thymus
29	chrX:79930600-79949400	Weak transcription	Spleen	Spleen
30	chrX:79930600-79949800	Weak transcription	Gastric	stomach
31	chrX:79930600-79953000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chrX:79930600-79955200	Weak transcription	Brain Cingulate Gyrus	brain
33	chrX:79930600-79959800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chrX:79930800-79934400	Weak transcription	Fetal Muscle Leg	muscle
35	chrX:79930800-79944600	Weak transcription	K562	blood
36	chrX:79930800-79946000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chrX:79930800-79962400	Weak transcription	Right Ventricle	heart
38	chrX:79930800-79987600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chrX:79931000-79934200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chrX:79931000-79934600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chrX:79931000-79935400	Strong transcription	Dnd41	blood
42	chrX:79931000-79936200	Weak transcription	Fetal Stomach	stomach
43	chrX:79931000-79937800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chrX:79931000-79947400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chrX:79931000-79949000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chrX:79931000-79949200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chrX:79931000-79949600	Weak transcription	Aorta	Aorta
48	chrX:79931000-79955800	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chrX:79931000-79971000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chrX:79931000-79982800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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