Variant report

Variant	rs6622355
Chromosome Location	chrX:79951019-79951020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:79945916..79948256-chrX:79950332..79951865,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12012250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs12012589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs6524017	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6616701	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6622362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916218	chrX:79377399-80230929	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv532882	chrX:79884715-80017999	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv524776	chrX:79903169-80012807	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv533969	chrX:79915477-79989648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:79926200-79978000	Weak transcription	NH-A	brain
2	chrX:79928600-79955000	Weak transcription	Hela-S3	cervix
3	chrX:79928600-79962000	Weak transcription	Fetal Brain Female	brain
4	chrX:79928800-79954000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chrX:79930400-79953400	Weak transcription	Rectal Smooth Muscle	rectum
6	chrX:79930600-79953000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chrX:79930600-79955200	Weak transcription	Brain Cingulate Gyrus	brain
8	chrX:79930600-79959800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chrX:79930800-79962400	Weak transcription	Right Ventricle	heart
10	chrX:79930800-79987600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chrX:79931000-79955800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chrX:79931000-79971000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chrX:79931000-79982800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chrX:79931200-79954800	Weak transcription	HMEC	breast
15	chrX:79931200-79960600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chrX:79931200-79985600	Weak transcription	A549	lung
17	chrX:79932800-79953400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chrX:79932800-79964200	Weak transcription	Colon Smooth Muscle	Colon
19	chrX:79932800-79984800	Weak transcription	Brain Anterior Caudate	brain
20	chrX:79933000-79961000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chrX:79933000-79972200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chrX:79933400-79972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chrX:79933400-79984600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chrX:79934600-79975200	Weak transcription	GM12878-XiMat	blood
25	chrX:79934800-79961600	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chrX:79935400-79986800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chrX:79935600-79952400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chrX:79936000-79977600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chrX:79936200-79980800	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chrX:79936600-80000200	Weak transcription	Small Intestine	intestine
31	chrX:79937000-79982000	Weak transcription	HSMMtube	muscle
32	chrX:79937000-80003600	Weak transcription	Fetal Lung	lung
33	chrX:79938000-79951200	Weak transcription	Psoas Muscle	Psoas
34	chrX:79938400-79956800	Weak transcription	Brain Substantia Nigra	brain
35	chrX:79938400-79959000	Weak transcription	HUVEC	blood vessel
36	chrX:79939000-79954800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chrX:79939200-79955800	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chrX:79940200-79972600	Weak transcription	Fetal Kidney	kidney
39	chrX:79940400-79964000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chrX:79941400-79951400	Weak transcription	Primary hematopoietic stem cells	blood
41	chrX:79942200-79951600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chrX:79942600-79977600	Weak transcription	HSMM	muscle
43	chrX:79943000-79953800	Strong transcription	Primary T cells fromperipheralblood	blood
44	chrX:79943800-79984800	Weak transcription	Brain Germinal Matrix	brain
45	chrX:79944000-79969800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chrX:79945800-79951800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chrX:79946800-79951200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chrX:79946800-79953400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chrX:79947000-79955600	Strong transcription	Primary B cells from peripheral blood	blood
50	chrX:79947200-79975400	Weak transcription	Pancreas	Pancrea

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